Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0269

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0268 and Dshi_0269 are separated by 97 nucleotidesDshi_0269 and Dshi_0270 are separated by 150 nucleotides Dshi_0268: Dshi_0268 - DNA-directed RNA polymerase, beta subunit (RefSeq), at 264,787 to 268,923 _0268 Dshi_0269: Dshi_0269 - DNA-directed RNA polymerase, beta' subunit (RefSeq), at 269,021 to 273,268 _0269 Dshi_0270: Dshi_0270 - protein of unknown function DUF6 transmembrane (RefSeq), at 273,419 to 274,324 _0270 Position (kb) 269 270 271 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 273.138 kb on + strandat 273.372 kb on - strandat 273.622 kb on - strand, within Dshi_0270at 273.674 kb on + strand, within Dshi_0270at 273.771 kb on - strand, within Dshi_0270at 273.787 kb on + strand, within Dshi_0270at 273.800 kb on + strand, within Dshi_0270at 273.873 kb on + strand, within Dshi_0270at 273.988 kb on + strand, within Dshi_0270at 274.022 kb on - strand, within Dshi_0270at 274.022 kb on - strand, within Dshi_0270at 274.180 kb on + strand, within Dshi_0270at 274.180 kb on + strand, within Dshi_0270at 274.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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273,138 + -2.4
273,372 - -1.0
273,622 - Dshi_0270 0.22 -0.5
273,674 + Dshi_0270 0.28 +0.2
273,771 - Dshi_0270 0.39 -0.4
273,787 + Dshi_0270 0.41 +0.4
273,800 + Dshi_0270 0.42 -1.1
273,873 + Dshi_0270 0.50 -0.9
273,988 + Dshi_0270 0.63 -1.1
274,022 - Dshi_0270 0.67 +1.8
274,022 - Dshi_0270 0.67 -0.4
274,180 + Dshi_0270 0.84 +0.2
274,180 + Dshi_0270 0.84 -0.2
274,237 - -0.7

Or see this region's nucleotide sequence