Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0237 and Dshi_0238 are separated by 286 nucleotides Dshi_0238 and Dshi_0239 are separated by 4 nucleotides Dshi_0239 and Dshi_0240 overlap by 4 nucleotides
Dshi_0237: Dshi_0237 - phenylalanyl-tRNA synthetase, beta subunit (RefSeq), at 234,571 to 236,967
_0237
Dshi_0238: Dshi_0238 - hypothetical protein (RefSeq), at 237,254 to 237,724
_0238
Dshi_0239: Dshi_0239 - Aspartate dehydrogenase (RefSeq), at 237,729 to 238,490
_0239
Dshi_0240: Dshi_0240 - Glutathione S-transferase domain (RefSeq), at 238,487 to 239,185
_0240
Position (kb) 237
238 Strain fitness (log2 ratio) -1
0
1 at 237.017 kb on - strand at 237.197 kb on + strand at 237.257 kb on + strand at 237.257 kb on + strand at 237.334 kb on - strand, within Dshi_0238 at 237.442 kb on + strand, within Dshi_0238 at 237.614 kb on - strand, within Dshi_0238 at 237.702 kb on - strand at 237.753 kb on + strand at 237.806 kb on + strand, within Dshi_0239 at 237.996 kb on - strand, within Dshi_0239 at 238.150 kb on - strand, within Dshi_0239 at 238.379 kb on + strand, within Dshi_0239 at 238.388 kb on + strand, within Dshi_0239 at 238.425 kb on - strand at 238.481 kb on - strand at 238.566 kb on - strand, within Dshi_0240 at 238.622 kb on + strand, within Dshi_0240 at 238.704 kb on + strand, within Dshi_0240
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 237,017 - -0.1 237,197 + -0.4 237,257 + +0.9 237,257 + -0.5 237,334 - Dshi_0238 0.17 -0.7 237,442 + Dshi_0238 0.40 -1.5 237,614 - Dshi_0238 0.76 -0.9 237,702 - -0.4 237,753 + +1.2 237,806 + Dshi_0239 0.10 -0.0 237,996 - Dshi_0239 0.35 -0.6 238,150 - Dshi_0239 0.55 -0.7 238,379 + Dshi_0239 0.85 +0.8 238,388 + Dshi_0239 0.86 -0.2 238,425 - -0.2 238,481 - -0.7 238,566 - Dshi_0240 0.11 +0.2 238,622 + Dshi_0240 0.19 +0.2 238,704 + Dshi_0240 0.31 -0.1
Or see this region's nucleotide sequence