Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides HP15_679 and HP15_680 are separated by 76 nucleotides HP15_680 and HP15_681 are separated by 86 nucleotides
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
Position (kb) 697
698 Strain fitness (log2 ratio) -1
0
1
2 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand at 697.167 kb on - strand, within HP15_679 at 697.245 kb on + strand, within HP15_679 at 697.253 kb on - strand, within HP15_679 at 697.351 kb on - strand at 697.391 kb on + strand at 697.670 kb on + strand at 697.747 kb on - strand at 697.793 kb on - strand at 697.808 kb on - strand, within HP15_681 at 697.844 kb on - strand, within HP15_681 at 697.919 kb on + strand, within HP15_681 at 697.934 kb on - strand, within HP15_681 at 697.955 kb on - strand, within HP15_681 at 697.969 kb on - strand, within HP15_681 at 698.119 kb on - strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.158 kb on + strand, within HP15_681 at 698.165 kb on + strand, within HP15_681 at 698.185 kb on + strand, within HP15_681 at 698.193 kb on - strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.234 kb on + strand, within HP15_681 at 698.242 kb on - strand, within HP15_681 at 698.329 kb on - strand, within HP15_681 at 698.342 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 696,092 + HP15_676 0.88 +0.6 696,235 + HP15_677 0.29 -1.0 696,292 - HP15_677 0.48 +0.5 696,311 - HP15_677 0.54 +1.3 696,322 - HP15_677 0.58 +0.8 696,412 - HP15_677 0.87 +0.8 696,419 - HP15_677 0.89 +1.6 696,501 + +0.0 696,520 - +1.3 696,549 + -0.2 696,549 + +1.0 696,557 - +0.7 696,635 + HP15_678 0.17 +1.8 696,641 - HP15_678 0.18 +1.2 696,641 - HP15_678 0.18 -0.1 696,641 - HP15_678 0.18 +1.8 696,736 - HP15_678 0.36 +2.5 696,784 + HP15_678 0.45 +1.2 696,789 + HP15_678 0.46 +0.4 696,789 + HP15_678 0.46 -1.1 696,789 + HP15_678 0.46 +1.1 696,797 - HP15_678 0.47 +0.6 696,914 + HP15_678 0.69 +0.7 696,935 + HP15_678 0.73 +0.3 696,994 + HP15_678 0.84 -0.3 697,021 - HP15_678 0.89 +0.1 697,022 + HP15_678 0.90 -0.4 697,084 + +0.6 697,092 - +1.1 697,167 - HP15_679 0.31 +0.8 697,245 + HP15_679 0.61 +1.2 697,253 - HP15_679 0.64 +1.0 697,351 - +0.7 697,391 + +0.3 697,670 + -0.1 697,747 - -0.0 697,793 - +0.5 697,808 - HP15_681 0.12 +2.3 697,844 - HP15_681 0.17 +0.5 697,919 + HP15_681 0.28 +0.6 697,934 - HP15_681 0.30 -0.4 697,955 - HP15_681 0.33 +0.1 697,969 - HP15_681 0.36 +0.1 698,119 - HP15_681 0.58 +1.4 698,153 + HP15_681 0.63 +0.4 698,153 + HP15_681 0.63 -0.3 698,158 + HP15_681 0.64 -0.5 698,165 + HP15_681 0.65 +2.1 698,185 + HP15_681 0.68 -0.4 698,193 - HP15_681 0.69 -0.2 698,213 + HP15_681 0.72 -0.8 698,213 + HP15_681 0.72 +0.1 698,234 + HP15_681 0.75 -0.7 698,242 - HP15_681 0.76 +0.9 698,329 - HP15_681 0.89 -0.6 698,342 + +0.4
Or see this region's nucleotide sequence