Strain Fitness in Marinobacter adhaerens HP15 around HP15_3879

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3878 and HP15_3879 are separated by 135 nucleotidesHP15_3879 and HP15_3880 are separated by 235 nucleotides HP15_3878: HP15_3878 - acriflavin resistance protein D, at 4,104,043 to 4,107,207 _3878 HP15_3879: HP15_3879 - nitrite reductase (NAD(P)H), small subunit, at 4,107,343 to 4,107,663 _3879 HP15_3880: HP15_3880 - nitrite reductase (NAD(P)H), large subunit, at 4,107,899 to 4,110,406 _3880 Position (kb) 4107 4108Strain fitness (log2 ratio) -1 0 1 2at 4106.343 kb on + strand, within HP15_3878at 4106.356 kb on + strand, within HP15_3878at 4106.399 kb on + strand, within HP15_3878at 4106.399 kb on + strand, within HP15_3878at 4106.407 kb on - strand, within HP15_3878at 4106.407 kb on - strand, within HP15_3878at 4106.407 kb on - strand, within HP15_3878at 4106.422 kb on - strand, within HP15_3878at 4106.483 kb on + strand, within HP15_3878at 4106.541 kb on + strand, within HP15_3878at 4106.777 kb on + strand, within HP15_3878at 4106.782 kb on + strand, within HP15_3878at 4106.816 kb on + strand, within HP15_3878at 4106.888 kb on - strand, within HP15_3878at 4106.980 kb on + strandat 4106.980 kb on + strandat 4106.988 kb on - strandat 4106.988 kb on - strandat 4107.048 kb on - strandat 4107.089 kb on - strandat 4107.180 kb on + strandat 4107.209 kb on - strandat 4107.342 kb on - strandat 4107.427 kb on - strand, within HP15_3879at 4107.455 kb on + strand, within HP15_3879at 4107.455 kb on + strand, within HP15_3879at 4107.463 kb on - strand, within HP15_3879at 4107.463 kb on - strand, within HP15_3879at 4107.463 kb on - strand, within HP15_3879at 4107.463 kb on - strand, within HP15_3879at 4107.543 kb on + strand, within HP15_3879at 4107.561 kb on + strand, within HP15_3879at 4107.569 kb on - strand, within HP15_3879at 4107.908 kb on + strandat 4107.916 kb on - strandat 4107.916 kb on - strandat 4107.916 kb on - strandat 4107.942 kb on + strandat 4107.942 kb on + strandat 4108.005 kb on - strandat 4108.016 kb on + strandat 4108.090 kb on + strandat 4108.098 kb on - strandat 4108.098 kb on - strandat 4108.127 kb on + strandat 4108.135 kb on - strandat 4108.182 kb on + strand, within HP15_3880at 4108.210 kb on + strand, within HP15_3880at 4108.266 kb on - strand, within HP15_3880at 4108.373 kb on + strand, within HP15_3880at 4108.387 kb on + strand, within HP15_3880at 4108.414 kb on - strand, within HP15_3880at 4108.444 kb on + strand, within HP15_3880at 4108.454 kb on + strand, within HP15_3880at 4108.454 kb on + strand, within HP15_3880at 4108.454 kb on + strand, within HP15_3880at 4108.454 kb on + strand, within HP15_3880at 4108.462 kb on - strand, within HP15_3880at 4108.493 kb on + strand, within HP15_3880at 4108.495 kb on + strand, within HP15_3880at 4108.496 kb on - strand, within HP15_3880at 4108.496 kb on - strand, within HP15_3880at 4108.518 kb on + strand, within HP15_3880at 4108.585 kb on + strand, within HP15_3880at 4108.588 kb on - strand, within HP15_3880at 4108.590 kb on + strand, within HP15_3880at 4108.653 kb on + strand, within HP15_3880

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
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4,106,343 + HP15_3878 0.73 +0.4
4,106,356 + HP15_3878 0.73 +0.4
4,106,399 + HP15_3878 0.74 -1.1
4,106,399 + HP15_3878 0.74 +0.1
4,106,407 - HP15_3878 0.75 +2.6
4,106,407 - HP15_3878 0.75 +0.2
4,106,407 - HP15_3878 0.75 -0.7
4,106,422 - HP15_3878 0.75 -0.1
4,106,483 + HP15_3878 0.77 -0.1
4,106,541 + HP15_3878 0.79 +0.4
4,106,777 + HP15_3878 0.86 -0.2
4,106,782 + HP15_3878 0.87 -1.5
4,106,816 + HP15_3878 0.88 +0.4
4,106,888 - HP15_3878 0.90 -0.1
4,106,980 + -1.4
4,106,980 + +1.0
4,106,988 - -1.6
4,106,988 - +0.8
4,107,048 - -0.4
4,107,089 - +0.3
4,107,180 + +0.4
4,107,209 - +0.2
4,107,342 - +0.2
4,107,427 - HP15_3879 0.26 +1.1
4,107,455 + HP15_3879 0.35 +0.9
4,107,455 + HP15_3879 0.35 +1.4
4,107,463 - HP15_3879 0.37 +0.8
4,107,463 - HP15_3879 0.37 +1.2
4,107,463 - HP15_3879 0.37 -0.3
4,107,463 - HP15_3879 0.37 +0.1
4,107,543 + HP15_3879 0.62 -0.0
4,107,561 + HP15_3879 0.68 -0.2
4,107,569 - HP15_3879 0.70 -0.4
4,107,908 + -0.1
4,107,916 - -0.2
4,107,916 - +0.4
4,107,916 - -1.1
4,107,942 + -0.2
4,107,942 + -0.5
4,108,005 - +1.0
4,108,016 + -0.5
4,108,090 + -0.2
4,108,098 - -0.2
4,108,098 - +0.4
4,108,127 + -1.0
4,108,135 - +0.5
4,108,182 + HP15_3880 0.11 -0.1
4,108,210 + HP15_3880 0.12 +0.2
4,108,266 - HP15_3880 0.15 +0.3
4,108,373 + HP15_3880 0.19 -0.2
4,108,387 + HP15_3880 0.19 +0.3
4,108,414 - HP15_3880 0.21 +0.2
4,108,444 + HP15_3880 0.22 -0.2
4,108,454 + HP15_3880 0.22 +0.9
4,108,454 + HP15_3880 0.22 +1.4
4,108,454 + HP15_3880 0.22 +0.2
4,108,454 + HP15_3880 0.22 +1.6
4,108,462 - HP15_3880 0.22 +0.0
4,108,493 + HP15_3880 0.24 -0.2
4,108,495 + HP15_3880 0.24 -0.3
4,108,496 - HP15_3880 0.24 -0.2
4,108,496 - HP15_3880 0.24 +0.0
4,108,518 + HP15_3880 0.25 -0.9
4,108,585 + HP15_3880 0.27 -0.1
4,108,588 - HP15_3880 0.27 +0.1
4,108,590 + HP15_3880 0.28 -0.8
4,108,653 + HP15_3880 0.30 -1.2

Or see this region's nucleotide sequence