Strain Fitness in Marinobacter adhaerens HP15 around HP15_3737

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3735 and HP15_3736 are separated by 48 nucleotidesHP15_3736 and HP15_3737 are separated by 244 nucleotidesHP15_3737 and HP15_tRNA50 are separated by 98 nucleotidesHP15_tRNA50 and HP15_3738 are separated by 35 nucleotidesHP15_3738 and HP15_3739 are separated by 28 nucleotides HP15_3735: HP15_3735 - rhodanese domain protein-like protein, at 3,955,661 to 3,956,224 _3735 HP15_3736: HP15_3736 - protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen/ peroxiredoxin, C-terminal, at 3,956,273 to 3,956,899 _3736 HP15_3737: HP15_3737 - phospholipase D/transphosphatidylase, at 3,957,144 to 3,958,700 _3737 HP15_tRNA50: HP15_tRNA50 - tRNA-Pro, at 3,958,799 to 3,958,875 _tRNA50 HP15_3738: HP15_3738 - histidinol-phosphate phosphatase family protein, at 3,958,911 to 3,959,468 _3738 HP15_3739: HP15_3739 - glycyl-tRNA synthetase beta subunit, at 3,959,497 to 3,961,578 _3739 Position (kb) 3957 3958 3959Strain fitness (log2 ratio) -2 -1 0 1 2at 3956.150 kb on - strand, within HP15_3735at 3956.221 kb on + strandat 3956.229 kb on - strandat 3956.257 kb on - strandat 3956.271 kb on + strandat 3956.311 kb on - strandat 3956.332 kb on - strandat 3956.542 kb on - strand, within HP15_3736at 3956.565 kb on - strand, within HP15_3736at 3956.633 kb on + strand, within HP15_3736at 3956.818 kb on - strand, within HP15_3736at 3957.051 kb on + strandat 3957.064 kb on - strandat 3957.065 kb on + strandat 3957.072 kb on - strandat 3957.074 kb on - strandat 3957.076 kb on + strandat 3957.185 kb on + strandat 3957.734 kb on + strand, within HP15_3737at 3957.735 kb on + strand, within HP15_3737at 3957.742 kb on - strand, within HP15_3737at 3957.749 kb on + strand, within HP15_3737at 3957.815 kb on + strand, within HP15_3737at 3957.818 kb on - strand, within HP15_3737at 3957.828 kb on - strand, within HP15_3737at 3958.059 kb on + strand, within HP15_3737at 3958.104 kb on + strand, within HP15_3737at 3958.132 kb on - strand, within HP15_3737at 3958.153 kb on - strand, within HP15_3737at 3958.206 kb on + strand, within HP15_3737at 3958.216 kb on - strand, within HP15_3737at 3958.241 kb on + strand, within HP15_3737at 3958.489 kb on + strand, within HP15_3737at 3958.823 kb on - strand, within HP15_tRNA50at 3958.973 kb on + strand, within HP15_3738at 3959.040 kb on - strand, within HP15_3738at 3959.111 kb on + strand, within HP15_3738at 3959.119 kb on - strand, within HP15_3738at 3959.241 kb on - strand, within HP15_3738at 3959.282 kb on + strand, within HP15_3738at 3959.355 kb on - strand, within HP15_3738at 3959.379 kb on + strand, within HP15_3738at 3959.473 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
remove
3,956,150 - HP15_3735 0.87 +0.4
3,956,221 + +0.2
3,956,229 - -0.7
3,956,257 - -0.6
3,956,271 + -0.2
3,956,311 - -0.8
3,956,332 - -0.3
3,956,542 - HP15_3736 0.43 +0.5
3,956,565 - HP15_3736 0.47 -1.0
3,956,633 + HP15_3736 0.57 +0.8
3,956,818 - HP15_3736 0.87 -0.9
3,957,051 + +0.6
3,957,064 - +0.3
3,957,065 + +0.2
3,957,072 - -0.3
3,957,074 - -0.5
3,957,076 + -2.5
3,957,185 + -0.6
3,957,734 + HP15_3737 0.38 +1.3
3,957,735 + HP15_3737 0.38 -0.3
3,957,742 - HP15_3737 0.38 +0.2
3,957,749 + HP15_3737 0.39 +0.8
3,957,815 + HP15_3737 0.43 +0.2
3,957,818 - HP15_3737 0.43 +0.4
3,957,828 - HP15_3737 0.44 +1.0
3,958,059 + HP15_3737 0.59 -0.5
3,958,104 + HP15_3737 0.62 -1.0
3,958,132 - HP15_3737 0.63 +0.6
3,958,153 - HP15_3737 0.65 +0.3
3,958,206 + HP15_3737 0.68 +0.5
3,958,216 - HP15_3737 0.69 +1.1
3,958,241 + HP15_3737 0.70 +0.4
3,958,489 + HP15_3737 0.86 +0.8
3,958,823 - HP15_tRNA50 0.31 +0.1
3,958,973 + HP15_3738 0.11 -0.5
3,959,040 - HP15_3738 0.23 -0.1
3,959,111 + HP15_3738 0.36 -0.2
3,959,119 - HP15_3738 0.37 +0.1
3,959,241 - HP15_3738 0.59 +2.0
3,959,282 + HP15_3738 0.66 -1.1
3,959,355 - HP15_3738 0.80 -0.4
3,959,379 + HP15_3738 0.84 +0.1
3,959,473 - -0.4

Or see this region's nucleotide sequence