Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3470 and Psest_3471 are separated by 150 nucleotides Psest_3471 and Psest_3472 overlap by 17 nucleotides Psest_3472 and Psest_3473 are separated by 15 nucleotides Psest_3473 and Psest_3474 overlap by 14 nucleotides
Psest_3470: Psest_3470 - Uncharacterized conserved protein, at 3,640,548 to 3,640,943
_3470
Psest_3471: Psest_3471 - Thermostable hemolysin., at 3,641,094 to 3,641,783
_3471
Psest_3472: Psest_3472 - Long-chain acyl-CoA synthetases (AMP-forming), at 3,641,767 to 3,643,212
_3472
Psest_3473: Psest_3473 - hypothetical protein, at 3,643,228 to 3,643,899
_3473
Psest_3474: Psest_3474 - Short-chain dehydrogenases of various substrate specificities, at 3,643,886 to 3,644,719
_3474
Position (kb)
3641
3642
3643
3644 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3640.772 kb on + strand, within Psest_3470 at 3640.786 kb on + strand, within Psest_3470 at 3640.786 kb on + strand, within Psest_3470 at 3640.888 kb on + strand, within Psest_3470 at 3640.888 kb on + strand, within Psest_3470 at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.972 kb on + strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3640.973 kb on - strand at 3641.034 kb on + strand at 3641.034 kb on + strand at 3641.034 kb on + strand at 3641.034 kb on + strand at 3641.035 kb on - strand at 3641.035 kb on - strand at 3641.035 kb on - strand at 3641.035 kb on - strand at 3641.035 kb on - strand at 3641.035 kb on - strand at 3641.045 kb on + strand at 3641.045 kb on + strand at 3641.045 kb on + strand at 3641.046 kb on - strand at 3641.046 kb on - strand at 3641.046 kb on - strand at 3641.125 kb on + strand at 3641.125 kb on + strand at 3641.125 kb on + strand at 3641.125 kb on + strand at 3641.126 kb on - strand at 3641.126 kb on - strand at 3641.643 kb on + strand, within Psest_3471 at 3641.643 kb on + strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.644 kb on - strand, within Psest_3471 at 3641.646 kb on + strand, within Psest_3471 at 3641.646 kb on + strand, within Psest_3471 at 3641.646 kb on + strand, within Psest_3471 at 3641.647 kb on - strand, within Psest_3471 at 3641.719 kb on - strand at 3641.851 kb on + strand at 3641.903 kb on + strand at 3641.903 kb on + strand at 3641.904 kb on - strand at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.181 kb on + strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.182 kb on - strand, within Psest_3472 at 3642.183 kb on + strand, within Psest_3472 at 3642.183 kb on + strand, within Psest_3472 at 3642.183 kb on + strand, within Psest_3472 at 3642.183 kb on + strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.184 kb on - strand, within Psest_3472 at 3642.628 kb on + strand, within Psest_3472 at 3643.276 kb on + strand at 3643.276 kb on + strand at 3643.277 kb on - strand at 3643.336 kb on + strand, within Psest_3473 at 3643.336 kb on + strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.337 kb on - strand, within Psest_3473 at 3643.360 kb on + strand, within Psest_3473 at 3643.361 kb on - strand, within Psest_3473 at 3643.453 kb on + strand, within Psest_3473 at 3643.454 kb on - strand, within Psest_3473 at 3643.574 kb on - strand, within Psest_3473 at 3643.574 kb on - strand, within Psest_3473 at 3643.574 kb on - strand, within Psest_3473 at 3643.579 kb on + strand, within Psest_3473 at 3643.579 kb on + strand, within Psest_3473 at 3643.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 3,640,772 + Psest_3470 0.57 -0.5 3,640,786 + Psest_3470 0.60 +0.4 3,640,786 + Psest_3470 0.60 -0.4 3,640,888 + Psest_3470 0.86 +0.6 3,640,888 + Psest_3470 0.86 -1.8 3,640,972 + +0.5 3,640,972 + +0.3 3,640,972 + -0.8 3,640,972 + +0.4 3,640,972 + +0.4 3,640,972 + +0.4 3,640,972 + +0.4 3,640,972 + +0.0 3,640,972 + +2.6 3,640,972 + -1.3 3,640,972 + +0.7 3,640,972 + +0.0 3,640,972 + +0.0 3,640,972 + -0.7 3,640,972 + +0.2 3,640,972 + -0.2 3,640,973 - +0.0 3,640,973 - -0.1 3,640,973 - -1.1 3,640,973 - +2.3 3,640,973 - -0.8 3,640,973 - +1.2 3,640,973 - -1.4 3,640,973 - +0.7 3,640,973 - +0.5 3,640,973 - -0.6 3,640,973 - -0.2 3,640,973 - -0.4 3,640,973 - -0.6 3,641,034 + -0.6 3,641,034 + -0.3 3,641,034 + +0.0 3,641,034 + -0.6 3,641,035 - +2.6 3,641,035 - -0.3 3,641,035 - +0.9 3,641,035 - -0.6 3,641,035 - +0.6 3,641,035 - -0.1 3,641,045 + -0.9 3,641,045 + +0.0 3,641,045 + +0.7 3,641,046 - +2.6 3,641,046 - +0.6 3,641,046 - -1.0 3,641,125 + +1.4 3,641,125 + -0.3 3,641,125 + +0.8 3,641,125 + +2.0 3,641,126 - -0.6 3,641,126 - -1.2 3,641,643 + Psest_3471 0.80 -0.6 3,641,643 + Psest_3471 0.80 -0.7 3,641,644 - Psest_3471 0.80 +0.7 3,641,644 - Psest_3471 0.80 +0.1 3,641,644 - Psest_3471 0.80 +2.0 3,641,644 - Psest_3471 0.80 -0.9 3,641,644 - Psest_3471 0.80 +0.3 3,641,644 - Psest_3471 0.80 -1.1 3,641,646 + Psest_3471 0.80 +1.0 3,641,646 + Psest_3471 0.80 -0.3 3,641,646 + Psest_3471 0.80 +0.0 3,641,647 - Psest_3471 0.80 +0.0 3,641,719 - +0.1 3,641,851 + -1.0 3,641,903 + +1.0 3,641,903 + -0.2 3,641,904 - +1.6 3,642,181 + Psest_3472 0.29 +0.0 3,642,181 + Psest_3472 0.29 -0.3 3,642,181 + Psest_3472 0.29 +0.3 3,642,181 + Psest_3472 0.29 -0.1 3,642,181 + Psest_3472 0.29 +0.7 3,642,181 + Psest_3472 0.29 +1.4 3,642,181 + Psest_3472 0.29 +0.0 3,642,181 + Psest_3472 0.29 +0.4 3,642,181 + Psest_3472 0.29 -1.0 3,642,181 + Psest_3472 0.29 +0.4 3,642,181 + Psest_3472 0.29 +2.0 3,642,181 + Psest_3472 0.29 -0.4 3,642,181 + Psest_3472 0.29 -2.0 3,642,181 + Psest_3472 0.29 +1.0 3,642,181 + Psest_3472 0.29 +0.4 3,642,181 + Psest_3472 0.29 +0.0 3,642,182 - Psest_3472 0.29 -2.3 3,642,182 - Psest_3472 0.29 -1.6 3,642,182 - Psest_3472 0.29 -1.3 3,642,182 - Psest_3472 0.29 -0.2 3,642,182 - Psest_3472 0.29 -2.7 3,642,182 - Psest_3472 0.29 +1.0 3,642,182 - Psest_3472 0.29 -0.8 3,642,182 - Psest_3472 0.29 -1.5 3,642,182 - Psest_3472 0.29 -0.6 3,642,182 - Psest_3472 0.29 -2.8 3,642,182 - Psest_3472 0.29 -1.0 3,642,182 - Psest_3472 0.29 +0.4 3,642,182 - Psest_3472 0.29 -1.8 3,642,183 + Psest_3472 0.29 -0.6 3,642,183 + Psest_3472 0.29 +0.7 3,642,183 + Psest_3472 0.29 +1.0 3,642,183 + Psest_3472 0.29 +1.0 3,642,184 - Psest_3472 0.29 -1.0 3,642,184 - Psest_3472 0.29 -1.0 3,642,184 - Psest_3472 0.29 -1.6 3,642,184 - Psest_3472 0.29 +0.0 3,642,184 - Psest_3472 0.29 -0.6 3,642,184 - Psest_3472 0.29 -1.0 3,642,184 - Psest_3472 0.29 -2.0 3,642,628 + Psest_3472 0.60 +0.9 3,643,276 + +0.4 3,643,276 + +0.8 3,643,277 - +0.7 3,643,336 + Psest_3473 0.16 +0.1 3,643,336 + Psest_3473 0.16 +0.4 3,643,337 - Psest_3473 0.16 -1.3 3,643,337 - Psest_3473 0.16 +0.0 3,643,337 - Psest_3473 0.16 +0.0 3,643,337 - Psest_3473 0.16 -1.3 3,643,337 - Psest_3473 0.16 -1.0 3,643,337 - Psest_3473 0.16 +2.6 3,643,337 - Psest_3473 0.16 -1.3 3,643,360 + Psest_3473 0.20 +1.8 3,643,361 - Psest_3473 0.20 +0.0 3,643,453 + Psest_3473 0.33 -1.0 3,643,454 - Psest_3473 0.34 -1.3 3,643,574 - Psest_3473 0.51 +0.0 3,643,574 - Psest_3473 0.51 -1.6 3,643,574 - Psest_3473 0.51 -0.6 3,643,579 + Psest_3473 0.52 +0.0 3,643,579 + Psest_3473 0.52 +0.0 3,643,835 - +1.0
Or see this region's nucleotide sequence