Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2734 and HP15_2735 are separated by 118 nucleotides HP15_2735 and HP15_2736 are separated by 48 nucleotides HP15_2736 and HP15_2737 are separated by 187 nucleotides
HP15_2734: HP15_2734 - conserved hypothetical protein, at 2,887,325 to 2,888,482
_2734
HP15_2735: HP15_2735 - diguanylate cyclase with PAS/PAC sensor, at 2,888,601 to 2,889,539
_2735
HP15_2736: HP15_2736 - pseudoazurin, at 2,889,588 to 2,890,037
_2736
HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803
_2737
Position (kb)
2888
2889
2890 Strain fitness (log2 ratio)
-1
0
1
2 at 2887.623 kb on - strand, within HP15_2734 at 2887.712 kb on - strand, within HP15_2734 at 2887.722 kb on - strand, within HP15_2734 at 2887.734 kb on - strand, within HP15_2734 at 2887.734 kb on - strand, within HP15_2734 at 2887.917 kb on + strand, within HP15_2734 at 2887.925 kb on - strand, within HP15_2734 at 2888.029 kb on + strand, within HP15_2734 at 2888.029 kb on + strand, within HP15_2734 at 2888.037 kb on - strand, within HP15_2734 at 2888.148 kb on + strand, within HP15_2734 at 2888.181 kb on - strand, within HP15_2734 at 2888.261 kb on - strand, within HP15_2734 at 2888.345 kb on - strand, within HP15_2734 at 2888.511 kb on + strand at 2888.511 kb on + strand at 2888.548 kb on - strand at 2888.571 kb on + strand at 2888.574 kb on - strand at 2888.579 kb on - strand at 2888.622 kb on - strand at 2888.625 kb on + strand at 2888.663 kb on + strand at 2888.748 kb on + strand, within HP15_2735 at 2888.775 kb on - strand, within HP15_2735 at 2888.782 kb on - strand, within HP15_2735 at 2889.051 kb on + strand, within HP15_2735 at 2889.157 kb on - strand, within HP15_2735 at 2889.163 kb on + strand, within HP15_2735 at 2889.179 kb on - strand, within HP15_2735 at 2889.416 kb on - strand, within HP15_2735 at 2889.714 kb on + strand, within HP15_2736 at 2889.720 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.773 kb on + strand, within HP15_2736 at 2889.812 kb on - strand, within HP15_2736 at 2889.820 kb on - strand, within HP15_2736 at 2889.822 kb on + strand, within HP15_2736 at 2889.830 kb on + strand, within HP15_2736 at 2889.844 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.854 kb on - strand, within HP15_2736 at 2890.006 kb on + strand at 2890.077 kb on + strand at 2890.096 kb on + strand at 2890.120 kb on + strand at 2890.250 kb on - strand at 2890.264 kb on - strand at 2890.332 kb on - strand, within HP15_2737 at 2890.436 kb on + strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 2,887,623 - HP15_2734 0.26 -0.2 2,887,712 - HP15_2734 0.33 +0.9 2,887,722 - HP15_2734 0.34 +0.6 2,887,734 - HP15_2734 0.35 +0.0 2,887,734 - HP15_2734 0.35 +0.4 2,887,917 + HP15_2734 0.51 -0.7 2,887,925 - HP15_2734 0.52 -0.2 2,888,029 + HP15_2734 0.61 -1.0 2,888,029 + HP15_2734 0.61 +0.2 2,888,037 - HP15_2734 0.61 -0.1 2,888,148 + HP15_2734 0.71 +0.4 2,888,181 - HP15_2734 0.74 +0.4 2,888,261 - HP15_2734 0.81 +0.6 2,888,345 - HP15_2734 0.88 -1.1 2,888,511 + -0.1 2,888,511 + -0.0 2,888,548 - -0.1 2,888,571 + -0.8 2,888,574 - -0.1 2,888,579 - -0.5 2,888,622 - +0.1 2,888,625 + +1.1 2,888,663 + +1.2 2,888,748 + HP15_2735 0.16 -0.7 2,888,775 - HP15_2735 0.19 -0.5 2,888,782 - HP15_2735 0.19 +0.2 2,889,051 + HP15_2735 0.48 +0.4 2,889,157 - HP15_2735 0.59 -0.8 2,889,163 + HP15_2735 0.60 -1.4 2,889,179 - HP15_2735 0.62 -0.8 2,889,416 - HP15_2735 0.87 -0.5 2,889,714 + HP15_2736 0.28 +0.4 2,889,720 + HP15_2736 0.29 -0.2 2,889,752 + HP15_2736 0.36 -0.5 2,889,752 + HP15_2736 0.36 +1.1 2,889,773 + HP15_2736 0.41 +0.8 2,889,812 - HP15_2736 0.50 +1.5 2,889,820 - HP15_2736 0.52 -0.2 2,889,822 + HP15_2736 0.52 -0.5 2,889,830 + HP15_2736 0.54 +0.3 2,889,844 + HP15_2736 0.57 +1.2 2,889,846 + HP15_2736 0.57 +0.8 2,889,846 + HP15_2736 0.57 -1.2 2,889,854 - HP15_2736 0.59 -0.8 2,890,006 + +0.4 2,890,077 + -0.2 2,890,096 + +0.9 2,890,120 + -0.3 2,890,250 - -0.0 2,890,264 - +1.4 2,890,332 - HP15_2737 0.18 -0.0 2,890,436 + HP15_2737 0.36 +2.0 2,890,444 - HP15_2737 0.38 +0.2 2,890,444 - HP15_2737 0.38 +2.4
Or see this region's nucleotide sequence