Strain Fitness in Marinobacter adhaerens HP15 around HP15_2121

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2120 and HP15_2121 are separated by 36 nucleotidesHP15_2121 and HP15_2122 overlap by 4 nucleotides HP15_2120: HP15_2120 - conserved hypothetical protein, secreted, at 2,218,815 to 2,219,870 _2120 HP15_2121: HP15_2121 - long-chain fatty acid transport protein, at 2,219,907 to 2,221,574 _2121 HP15_2122: HP15_2122 - conserved hypothetical protein, secreted, at 2,221,571 to 2,222,581 _2122 Position (kb) 2219 2220 2221 2222Strain fitness (log2 ratio) -1 0 1 2at 2218.921 kb on + strand, within HP15_2120at 2219.080 kb on + strand, within HP15_2120at 2219.122 kb on + strand, within HP15_2120at 2219.162 kb on + strand, within HP15_2120at 2219.281 kb on - strand, within HP15_2120at 2219.363 kb on + strand, within HP15_2120at 2219.367 kb on - strand, within HP15_2120at 2219.525 kb on - strand, within HP15_2120at 2219.529 kb on + strand, within HP15_2120at 2219.646 kb on - strand, within HP15_2120at 2219.812 kb on + strandat 2219.893 kb on - strandat 2219.905 kb on + strandat 2220.145 kb on + strand, within HP15_2121at 2220.318 kb on - strand, within HP15_2121at 2220.436 kb on - strand, within HP15_2121at 2220.468 kb on - strand, within HP15_2121at 2220.468 kb on - strand, within HP15_2121at 2220.522 kb on - strand, within HP15_2121at 2220.553 kb on - strand, within HP15_2121at 2220.645 kb on - strand, within HP15_2121at 2220.697 kb on - strand, within HP15_2121at 2220.697 kb on - strand, within HP15_2121at 2220.854 kb on + strand, within HP15_2121at 2220.902 kb on + strand, within HP15_2121at 2220.968 kb on - strand, within HP15_2121at 2220.968 kb on - strand, within HP15_2121at 2221.093 kb on + strand, within HP15_2121at 2221.113 kb on + strand, within HP15_2121at 2221.125 kb on + strand, within HP15_2121at 2221.276 kb on + strand, within HP15_2121at 2221.321 kb on + strand, within HP15_2121at 2221.473 kb on + strandat 2221.476 kb on - strandat 2221.726 kb on - strand, within HP15_2122at 2221.881 kb on - strand, within HP15_2122at 2221.930 kb on - strand, within HP15_2122at 2222.084 kb on - strand, within HP15_2122at 2222.326 kb on + strand, within HP15_2122at 2222.334 kb on - strand, within HP15_2122at 2222.346 kb on + strand, within HP15_2122

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
remove
2,218,921 + HP15_2120 0.10 +0.3
2,219,080 + HP15_2120 0.25 +0.2
2,219,122 + HP15_2120 0.29 +0.5
2,219,162 + HP15_2120 0.33 -0.5
2,219,281 - HP15_2120 0.44 -0.1
2,219,363 + HP15_2120 0.52 -0.3
2,219,367 - HP15_2120 0.52 -0.5
2,219,525 - HP15_2120 0.67 +1.2
2,219,529 + HP15_2120 0.68 +2.5
2,219,646 - HP15_2120 0.79 +0.0
2,219,812 + +1.1
2,219,893 - +0.5
2,219,905 + +0.3
2,220,145 + HP15_2121 0.14 -0.5
2,220,318 - HP15_2121 0.25 +1.0
2,220,436 - HP15_2121 0.32 +0.8
2,220,468 - HP15_2121 0.34 -0.5
2,220,468 - HP15_2121 0.34 +0.2
2,220,522 - HP15_2121 0.37 +0.9
2,220,553 - HP15_2121 0.39 +1.9
2,220,645 - HP15_2121 0.44 +0.4
2,220,697 - HP15_2121 0.47 -0.3
2,220,697 - HP15_2121 0.47 +0.6
2,220,854 + HP15_2121 0.57 -0.2
2,220,902 + HP15_2121 0.60 +2.5
2,220,968 - HP15_2121 0.64 +0.5
2,220,968 - HP15_2121 0.64 +0.9
2,221,093 + HP15_2121 0.71 +1.1
2,221,113 + HP15_2121 0.72 +0.3
2,221,125 + HP15_2121 0.73 +0.2
2,221,276 + HP15_2121 0.82 -1.1
2,221,321 + HP15_2121 0.85 +0.1
2,221,473 + -0.5
2,221,476 - -0.2
2,221,726 - HP15_2122 0.15 -0.1
2,221,881 - HP15_2122 0.31 +0.3
2,221,930 - HP15_2122 0.36 +1.0
2,222,084 - HP15_2122 0.51 -0.8
2,222,326 + HP15_2122 0.75 +0.2
2,222,334 - HP15_2122 0.75 +1.1
2,222,346 + HP15_2122 0.77 +0.5

Or see this region's nucleotide sequence