Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2120 and HP15_2121 are separated by 36 nucleotides HP15_2121 and HP15_2122 overlap by 4 nucleotides
HP15_2120: HP15_2120 - conserved hypothetical protein, secreted, at 2,218,815 to 2,219,870
_2120
HP15_2121: HP15_2121 - long-chain fatty acid transport protein, at 2,219,907 to 2,221,574
_2121
HP15_2122: HP15_2122 - conserved hypothetical protein, secreted, at 2,221,571 to 2,222,581
_2122
Position (kb)
2219
2220
2221
2222 Strain fitness (log2 ratio)
-1
0
1
2 at 2218.921 kb on + strand, within HP15_2120 at 2219.080 kb on + strand, within HP15_2120 at 2219.122 kb on + strand, within HP15_2120 at 2219.162 kb on + strand, within HP15_2120 at 2219.281 kb on - strand, within HP15_2120 at 2219.363 kb on + strand, within HP15_2120 at 2219.367 kb on - strand, within HP15_2120 at 2219.525 kb on - strand, within HP15_2120 at 2219.529 kb on + strand, within HP15_2120 at 2219.646 kb on - strand, within HP15_2120 at 2219.812 kb on + strand at 2219.893 kb on - strand at 2219.905 kb on + strand at 2220.145 kb on + strand, within HP15_2121 at 2220.318 kb on - strand, within HP15_2121 at 2220.436 kb on - strand, within HP15_2121 at 2220.468 kb on - strand, within HP15_2121 at 2220.468 kb on - strand, within HP15_2121 at 2220.522 kb on - strand, within HP15_2121 at 2220.553 kb on - strand, within HP15_2121 at 2220.645 kb on - strand, within HP15_2121 at 2220.697 kb on - strand, within HP15_2121 at 2220.697 kb on - strand, within HP15_2121 at 2220.854 kb on + strand, within HP15_2121 at 2220.902 kb on + strand, within HP15_2121 at 2220.968 kb on - strand, within HP15_2121 at 2220.968 kb on - strand, within HP15_2121 at 2221.093 kb on + strand, within HP15_2121 at 2221.113 kb on + strand, within HP15_2121 at 2221.125 kb on + strand, within HP15_2121 at 2221.276 kb on + strand, within HP15_2121 at 2221.321 kb on + strand, within HP15_2121 at 2221.473 kb on + strand at 2221.476 kb on - strand at 2221.726 kb on - strand, within HP15_2122 at 2221.881 kb on - strand, within HP15_2122 at 2221.930 kb on - strand, within HP15_2122 at 2222.084 kb on - strand, within HP15_2122 at 2222.326 kb on + strand, within HP15_2122 at 2222.334 kb on - strand, within HP15_2122 at 2222.346 kb on + strand, within HP15_2122
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 2,218,921 + HP15_2120 0.10 +0.3 2,219,080 + HP15_2120 0.25 +0.2 2,219,122 + HP15_2120 0.29 +0.5 2,219,162 + HP15_2120 0.33 -0.5 2,219,281 - HP15_2120 0.44 -0.1 2,219,363 + HP15_2120 0.52 -0.3 2,219,367 - HP15_2120 0.52 -0.5 2,219,525 - HP15_2120 0.67 +1.2 2,219,529 + HP15_2120 0.68 +2.5 2,219,646 - HP15_2120 0.79 +0.0 2,219,812 + +1.1 2,219,893 - +0.5 2,219,905 + +0.3 2,220,145 + HP15_2121 0.14 -0.5 2,220,318 - HP15_2121 0.25 +1.0 2,220,436 - HP15_2121 0.32 +0.8 2,220,468 - HP15_2121 0.34 -0.5 2,220,468 - HP15_2121 0.34 +0.2 2,220,522 - HP15_2121 0.37 +0.9 2,220,553 - HP15_2121 0.39 +1.9 2,220,645 - HP15_2121 0.44 +0.4 2,220,697 - HP15_2121 0.47 -0.3 2,220,697 - HP15_2121 0.47 +0.6 2,220,854 + HP15_2121 0.57 -0.2 2,220,902 + HP15_2121 0.60 +2.5 2,220,968 - HP15_2121 0.64 +0.5 2,220,968 - HP15_2121 0.64 +0.9 2,221,093 + HP15_2121 0.71 +1.1 2,221,113 + HP15_2121 0.72 +0.3 2,221,125 + HP15_2121 0.73 +0.2 2,221,276 + HP15_2121 0.82 -1.1 2,221,321 + HP15_2121 0.85 +0.1 2,221,473 + -0.5 2,221,476 - -0.2 2,221,726 - HP15_2122 0.15 -0.1 2,221,881 - HP15_2122 0.31 +0.3 2,221,930 - HP15_2122 0.36 +1.0 2,222,084 - HP15_2122 0.51 -0.8 2,222,326 + HP15_2122 0.75 +0.2 2,222,334 - HP15_2122 0.75 +1.1 2,222,346 + HP15_2122 0.77 +0.5
Or see this region's nucleotide sequence