Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1710 and HP15_1711 overlap by 11 nucleotides HP15_1711 and HP15_1712 are separated by 155 nucleotides
HP15_1710: HP15_1710 - glycoside hydrolase, family 57, at 1,805,199 to 1,806,926
_1710
HP15_1711: HP15_1711 - glucose-1-phosphate adenylyltransferase, at 1,806,916 to 1,808,181
_1711
HP15_1712: HP15_1712 - glycogen branching enzyme, at 1,808,337 to 1,810,271
_1712
Position (kb)
1806
1807
1808
1809 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1805.924 kb on - strand, within HP15_1710 at 1805.925 kb on - strand, within HP15_1710 at 1806.097 kb on - strand, within HP15_1710 at 1806.103 kb on - strand, within HP15_1710 at 1806.126 kb on - strand, within HP15_1710 at 1806.229 kb on + strand, within HP15_1710 at 1806.248 kb on + strand, within HP15_1710 at 1806.273 kb on + strand, within HP15_1710 at 1806.302 kb on + strand, within HP15_1710 at 1806.526 kb on - strand, within HP15_1710 at 1806.718 kb on + strand, within HP15_1710 at 1806.725 kb on - strand, within HP15_1710 at 1806.846 kb on - strand at 1806.902 kb on - strand at 1806.915 kb on - strand at 1806.929 kb on + strand at 1807.094 kb on - strand, within HP15_1711 at 1807.223 kb on + strand, within HP15_1711 at 1807.223 kb on + strand, within HP15_1711 at 1807.223 kb on + strand, within HP15_1711 at 1807.231 kb on - strand, within HP15_1711 at 1807.275 kb on + strand, within HP15_1711 at 1807.290 kb on + strand, within HP15_1711 at 1807.339 kb on - strand, within HP15_1711 at 1807.544 kb on - strand, within HP15_1711 at 1807.598 kb on + strand, within HP15_1711 at 1807.606 kb on - strand, within HP15_1711 at 1807.606 kb on - strand, within HP15_1711 at 1807.608 kb on + strand, within HP15_1711 at 1807.656 kb on + strand, within HP15_1711 at 1807.746 kb on - strand, within HP15_1711 at 1807.800 kb on - strand, within HP15_1711 at 1807.868 kb on + strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.975 kb on - strand, within HP15_1711 at 1808.094 kb on - strand at 1808.128 kb on - strand at 1808.261 kb on - strand at 1808.374 kb on + strand at 1808.392 kb on + strand at 1808.392 kb on + strand at 1808.392 kb on + strand at 1808.400 kb on - strand at 1808.400 kb on - strand at 1808.400 kb on - strand at 1808.433 kb on + strand at 1808.472 kb on - strand at 1808.520 kb on + strand at 1808.520 kb on + strand at 1808.641 kb on - strand, within HP15_1712 at 1808.709 kb on - strand, within HP15_1712 at 1808.802 kb on + strand, within HP15_1712 at 1808.860 kb on - strand, within HP15_1712 at 1808.890 kb on + strand, within HP15_1712 at 1808.914 kb on + strand, within HP15_1712 at 1808.984 kb on + strand, within HP15_1712 at 1809.011 kb on - strand, within HP15_1712
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 1,805,924 - HP15_1710 0.42 +0.0 1,805,925 - HP15_1710 0.42 -0.2 1,806,097 - HP15_1710 0.52 -0.0 1,806,103 - HP15_1710 0.52 -0.0 1,806,126 - HP15_1710 0.54 -1.7 1,806,229 + HP15_1710 0.60 -0.0 1,806,248 + HP15_1710 0.61 -2.2 1,806,273 + HP15_1710 0.62 -0.1 1,806,302 + HP15_1710 0.64 +1.2 1,806,526 - HP15_1710 0.77 +0.8 1,806,718 + HP15_1710 0.88 -0.3 1,806,725 - HP15_1710 0.88 -2.0 1,806,846 - -1.4 1,806,902 - +1.7 1,806,915 - -0.4 1,806,929 + -0.9 1,807,094 - HP15_1711 0.14 -0.7 1,807,223 + HP15_1711 0.24 -0.8 1,807,223 + HP15_1711 0.24 -0.4 1,807,223 + HP15_1711 0.24 +0.6 1,807,231 - HP15_1711 0.25 -0.7 1,807,275 + HP15_1711 0.28 +0.9 1,807,290 + HP15_1711 0.30 -0.9 1,807,339 - HP15_1711 0.33 +0.1 1,807,544 - HP15_1711 0.50 -0.0 1,807,598 + HP15_1711 0.54 +0.0 1,807,606 - HP15_1711 0.55 +2.6 1,807,606 - HP15_1711 0.55 -0.7 1,807,608 + HP15_1711 0.55 -0.1 1,807,656 + HP15_1711 0.58 -0.0 1,807,746 - HP15_1711 0.66 -0.8 1,807,800 - HP15_1711 0.70 -1.3 1,807,868 + HP15_1711 0.75 -0.7 1,807,897 - HP15_1711 0.77 -0.4 1,807,897 - HP15_1711 0.77 +1.3 1,807,897 - HP15_1711 0.77 -0.3 1,807,975 - HP15_1711 0.84 +0.7 1,808,094 - -1.3 1,808,128 - +0.3 1,808,261 - +0.2 1,808,374 + -0.3 1,808,392 + -0.9 1,808,392 + +0.2 1,808,392 + +2.0 1,808,400 - +1.0 1,808,400 - +1.3 1,808,400 - +0.1 1,808,433 + -0.7 1,808,472 - -1.2 1,808,520 + +0.5 1,808,520 + +0.8 1,808,641 - HP15_1712 0.16 +0.7 1,808,709 - HP15_1712 0.19 -0.3 1,808,802 + HP15_1712 0.24 +0.8 1,808,860 - HP15_1712 0.27 +1.7 1,808,890 + HP15_1712 0.29 -1.4 1,808,914 + HP15_1712 0.30 +0.9 1,808,984 + HP15_1712 0.33 -0.9 1,809,011 - HP15_1712 0.35 -0.2
Or see this region's nucleotide sequence