Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1670 and HP15_1671 are separated by 69 nucleotides HP15_1671 and HP15_1672 are separated by 351 nucleotides HP15_1672 and HP15_1673 are separated by 111 nucleotides
HP15_1670: HP15_1670 - conserved hypothetical protein, at 1,760,999 to 1,761,409
_1670
HP15_1671: HP15_1671 - secreted protein, at 1,761,479 to 1,761,598
_1671
HP15_1672: HP15_1672 - transcriptional regulator, AraC family protein, at 1,761,950 to 1,762,879
_1672
HP15_1673: HP15_1673 - NmrA family protein, at 1,762,991 to 1,763,833
_1673
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-1
0
1
2 at 1761.045 kb on - strand, within HP15_1670 at 1761.078 kb on - strand, within HP15_1670 at 1761.111 kb on + strand, within HP15_1670 at 1761.112 kb on + strand, within HP15_1670 at 1761.165 kb on + strand, within HP15_1670 at 1761.165 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.234 kb on + strand, within HP15_1670 at 1761.463 kb on + strand at 1761.642 kb on - strand at 1761.644 kb on - strand at 1761.784 kb on + strand at 1761.784 kb on + strand at 1761.796 kb on + strand at 1761.802 kb on - strand at 1762.014 kb on - strand at 1762.070 kb on - strand, within HP15_1672 at 1762.167 kb on + strand, within HP15_1672 at 1762.182 kb on + strand, within HP15_1672 at 1762.182 kb on + strand, within HP15_1672 at 1762.187 kb on + strand, within HP15_1672 at 1762.187 kb on + strand, within HP15_1672 at 1762.195 kb on - strand, within HP15_1672 at 1762.195 kb on - strand, within HP15_1672 at 1762.195 kb on - strand, within HP15_1672 at 1762.212 kb on - strand, within HP15_1672 at 1762.579 kb on + strand, within HP15_1672 at 1762.645 kb on - strand, within HP15_1672 at 1762.816 kb on + strand at 1762.825 kb on - strand at 1763.071 kb on + strand at 1763.239 kb on - strand, within HP15_1673 at 1763.239 kb on - strand, within HP15_1673 at 1763.307 kb on + strand, within HP15_1673 at 1763.309 kb on + strand, within HP15_1673 at 1763.317 kb on - strand, within HP15_1673 at 1763.381 kb on - strand, within HP15_1673 at 1763.414 kb on + strand, within HP15_1673 at 1763.422 kb on - strand, within HP15_1673 at 1763.422 kb on - strand, within HP15_1673 at 1763.515 kb on - strand, within HP15_1673 at 1763.555 kb on + strand, within HP15_1673 at 1763.563 kb on - strand, within HP15_1673 at 1763.629 kb on + strand, within HP15_1673 at 1763.648 kb on + strand, within HP15_1673 at 1763.695 kb on - strand, within HP15_1673 at 1763.745 kb on + strand, within HP15_1673 at 1763.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 1,761,045 - HP15_1670 0.11 +1.0 1,761,078 - HP15_1670 0.19 -0.4 1,761,111 + HP15_1670 0.27 -0.6 1,761,112 + HP15_1670 0.27 -0.1 1,761,165 + HP15_1670 0.40 -1.1 1,761,165 + HP15_1670 0.40 -0.4 1,761,175 + HP15_1670 0.43 -1.6 1,761,175 + HP15_1670 0.43 +0.0 1,761,175 + HP15_1670 0.43 -0.3 1,761,175 + HP15_1670 0.43 +0.3 1,761,183 - HP15_1670 0.45 -0.5 1,761,183 - HP15_1670 0.45 -0.1 1,761,183 - HP15_1670 0.45 +0.7 1,761,234 + HP15_1670 0.57 -0.0 1,761,463 + +1.1 1,761,642 - +0.6 1,761,644 - -1.0 1,761,784 + -0.3 1,761,784 + +0.8 1,761,796 + -0.2 1,761,802 - -0.3 1,762,014 - -0.2 1,762,070 - HP15_1672 0.13 -1.2 1,762,167 + HP15_1672 0.23 +0.2 1,762,182 + HP15_1672 0.25 -0.4 1,762,182 + HP15_1672 0.25 +1.5 1,762,187 + HP15_1672 0.25 -0.2 1,762,187 + HP15_1672 0.25 +0.4 1,762,195 - HP15_1672 0.26 -0.2 1,762,195 - HP15_1672 0.26 +0.3 1,762,195 - HP15_1672 0.26 -0.9 1,762,212 - HP15_1672 0.28 -0.6 1,762,579 + HP15_1672 0.68 -0.2 1,762,645 - HP15_1672 0.75 -0.8 1,762,816 + -0.0 1,762,825 - -0.3 1,763,071 + -0.3 1,763,239 - HP15_1673 0.29 +1.9 1,763,239 - HP15_1673 0.29 -1.3 1,763,307 + HP15_1673 0.37 -0.9 1,763,309 + HP15_1673 0.38 +0.7 1,763,317 - HP15_1673 0.39 +0.3 1,763,381 - HP15_1673 0.46 -0.0 1,763,414 + HP15_1673 0.50 +0.3 1,763,422 - HP15_1673 0.51 -0.5 1,763,422 - HP15_1673 0.51 +0.7 1,763,515 - HP15_1673 0.62 -0.4 1,763,555 + HP15_1673 0.67 +0.2 1,763,563 - HP15_1673 0.68 +0.3 1,763,629 + HP15_1673 0.76 -0.2 1,763,648 + HP15_1673 0.78 -0.5 1,763,695 - HP15_1673 0.84 +1.1 1,763,745 + HP15_1673 0.89 +0.9 1,763,798 - -0.3
Or see this region's nucleotide sequence