Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_124 and HP15_125 overlap by 1 nucleotides HP15_125 and HP15_126 are separated by 68 nucleotides HP15_126 and HP15_127 are separated by 27 nucleotides HP15_127 and HP15_128 overlap by 14 nucleotides
HP15_124: HP15_124 - hypothetical protein, at 134,036 to 134,272
_124
HP15_125: HP15_125 - conserved hypothetical protein, at 134,272 to 134,613
_125
HP15_126: HP15_126 - single-strand DNA-binding protein, at 134,682 to 135,080
_126
HP15_127: HP15_127 - hypothetical protein, at 135,108 to 135,353
_127
HP15_128: HP15_128 - conserved hypothetical protein, at 135,340 to 135,660
_128
Position (kb) 134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 133.272 kb on + strand at 133.290 kb on + strand at 133.309 kb on + strand at 133.356 kb on - strand at 133.378 kb on - strand at 133.440 kb on - strand at 133.491 kb on + strand at 133.499 kb on + strand at 133.596 kb on + strand at 133.646 kb on - strand at 133.737 kb on - strand at 133.745 kb on - strand at 133.758 kb on - strand at 133.973 kb on - strand at 134.033 kb on + strand at 134.079 kb on - strand, within HP15_124 at 134.126 kb on + strand, within HP15_124 at 134.185 kb on + strand, within HP15_124 at 134.185 kb on + strand, within HP15_124 at 134.193 kb on - strand, within HP15_124 at 134.193 kb on - strand, within HP15_124 at 134.206 kb on + strand, within HP15_124 at 134.226 kb on + strand, within HP15_124 at 134.231 kb on + strand, within HP15_124 at 134.239 kb on - strand, within HP15_124 at 134.245 kb on + strand, within HP15_124 at 134.245 kb on + strand, within HP15_124 at 134.288 kb on - strand at 134.305 kb on + strand at 134.313 kb on - strand, within HP15_125 at 134.313 kb on - strand, within HP15_125 at 134.324 kb on + strand, within HP15_125 at 134.324 kb on + strand, within HP15_125 at 134.324 kb on + strand, within HP15_125 at 134.409 kb on - strand, within HP15_125 at 134.421 kb on - strand, within HP15_125 at 134.476 kb on - strand, within HP15_125 at 134.673 kb on - strand at 134.733 kb on + strand, within HP15_126 at 134.791 kb on - strand, within HP15_126 at 134.791 kb on - strand, within HP15_126 at 134.820 kb on - strand, within HP15_126 at 134.881 kb on + strand, within HP15_126 at 134.896 kb on - strand, within HP15_126 at 134.939 kb on - strand, within HP15_126 at 134.986 kb on + strand, within HP15_126 at 135.096 kb on + strand at 135.216 kb on - strand, within HP15_127 at 135.278 kb on + strand, within HP15_127 at 135.399 kb on + strand, within HP15_128 at 135.402 kb on - strand, within HP15_128 at 135.435 kb on + strand, within HP15_128 at 135.435 kb on + strand, within HP15_128 at 135.504 kb on + strand, within HP15_128 at 135.505 kb on - strand, within HP15_128 at 135.526 kb on + strand, within HP15_128 at 135.559 kb on - strand, within HP15_128 at 135.569 kb on + strand, within HP15_128 at 135.577 kb on - strand, within HP15_128
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 133,272 + +0.2 133,290 + +1.3 133,309 + +1.0 133,356 - -1.2 133,378 - +1.0 133,440 - -0.6 133,491 + +1.0 133,499 + +0.3 133,596 + +1.6 133,646 - +0.1 133,737 - +0.1 133,745 - +0.7 133,758 - -0.5 133,973 - +2.3 134,033 + +0.3 134,079 - HP15_124 0.18 +0.7 134,126 + HP15_124 0.38 +0.6 134,185 + HP15_124 0.63 +1.4 134,185 + HP15_124 0.63 +0.8 134,193 - HP15_124 0.66 +0.6 134,193 - HP15_124 0.66 -0.4 134,206 + HP15_124 0.72 +0.3 134,226 + HP15_124 0.80 +1.2 134,231 + HP15_124 0.82 -0.2 134,239 - HP15_124 0.86 +0.9 134,245 + HP15_124 0.88 -0.6 134,245 + HP15_124 0.88 +1.9 134,288 - +0.8 134,305 + -0.3 134,313 - HP15_125 0.12 -1.4 134,313 - HP15_125 0.12 -1.7 134,324 + HP15_125 0.15 -1.3 134,324 + HP15_125 0.15 -3.2 134,324 + HP15_125 0.15 -0.2 134,409 - HP15_125 0.40 +1.0 134,421 - HP15_125 0.44 -0.0 134,476 - HP15_125 0.60 -0.4 134,673 - -0.6 134,733 + HP15_126 0.13 -0.5 134,791 - HP15_126 0.27 +0.5 134,791 - HP15_126 0.27 +1.2 134,820 - HP15_126 0.35 -0.4 134,881 + HP15_126 0.50 -0.5 134,896 - HP15_126 0.54 +0.1 134,939 - HP15_126 0.64 +1.8 134,986 + HP15_126 0.76 -0.2 135,096 + +0.3 135,216 - HP15_127 0.44 +0.6 135,278 + HP15_127 0.69 -0.8 135,399 + HP15_128 0.18 +0.3 135,402 - HP15_128 0.19 +0.1 135,435 + HP15_128 0.30 -0.4 135,435 + HP15_128 0.30 +0.3 135,504 + HP15_128 0.51 +0.6 135,505 - HP15_128 0.51 +0.4 135,526 + HP15_128 0.58 -0.7 135,559 - HP15_128 0.68 -0.7 135,569 + HP15_128 0.71 -0.3 135,577 - HP15_128 0.74 -1.2
Or see this region's nucleotide sequence