Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1048 and HP15_1049 overlap by 4 nucleotides HP15_1049 and HP15_1050 are separated by 240 nucleotides HP15_1050 and HP15_1051 are separated by 15 nucleotides
HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827
_1048
HP15_1049: HP15_1049 - hypothetical protein, at 1,070,824 to 1,071,084
_1049
HP15_1050: HP15_1050 - conserved hypothetical protein, at 1,071,325 to 1,071,795
_1050
HP15_1051: HP15_1051 - conserved hypothetical protein, at 1,071,811 to 1,072,188
_1051
Position (kb)
1070
1071
1072 Strain fitness (log2 ratio)
-1
0
1 at 1070.115 kb on + strand, within HP15_1048 at 1070.691 kb on - strand, within HP15_1048 at 1070.761 kb on + strand at 1070.766 kb on + strand at 1070.797 kb on - strand at 1070.821 kb on + strand at 1070.829 kb on - strand at 1070.872 kb on - strand, within HP15_1049 at 1071.025 kb on + strand, within HP15_1049 at 1071.036 kb on - strand, within HP15_1049 at 1071.039 kb on + strand, within HP15_1049 at 1071.200 kb on + strand at 1071.203 kb on - strand at 1071.216 kb on - strand at 1071.241 kb on - strand at 1071.245 kb on + strand at 1071.253 kb on - strand at 1071.299 kb on - strand at 1071.356 kb on + strand at 1071.364 kb on - strand at 1071.413 kb on + strand, within HP15_1050 at 1071.431 kb on - strand, within HP15_1050 at 1071.439 kb on - strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.486 kb on - strand, within HP15_1050 at 1071.571 kb on - strand, within HP15_1050 at 1071.631 kb on - strand, within HP15_1050 at 1071.764 kb on - strand at 1071.803 kb on + strand at 1071.852 kb on + strand, within HP15_1051 at 1071.864 kb on - strand, within HP15_1051 at 1071.935 kb on + strand, within HP15_1051 at 1071.964 kb on - strand, within HP15_1051 at 1071.984 kb on - strand, within HP15_1051 at 1072.070 kb on - strand, within HP15_1051
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 1,070,115 + HP15_1048 0.32 -1.7 1,070,691 - HP15_1048 0.87 -1.6 1,070,761 + -1.0 1,070,766 + -1.3 1,070,797 - +0.7 1,070,821 + +0.5 1,070,829 - -0.0 1,070,872 - HP15_1049 0.18 -0.7 1,071,025 + HP15_1049 0.77 +0.1 1,071,036 - HP15_1049 0.81 -0.9 1,071,039 + HP15_1049 0.82 -1.2 1,071,200 + +0.1 1,071,203 - -0.7 1,071,216 - -0.4 1,071,241 - -1.6 1,071,245 + +1.5 1,071,253 - -0.5 1,071,299 - -0.5 1,071,356 + +1.0 1,071,364 - +0.1 1,071,413 + HP15_1050 0.19 +0.0 1,071,431 - HP15_1050 0.23 -0.6 1,071,439 - HP15_1050 0.24 +0.0 1,071,478 + HP15_1050 0.32 +0.7 1,071,478 + HP15_1050 0.32 -0.3 1,071,486 - HP15_1050 0.34 +0.2 1,071,571 - HP15_1050 0.52 +0.4 1,071,631 - HP15_1050 0.65 -0.8 1,071,764 - +0.4 1,071,803 + -1.2 1,071,852 + HP15_1051 0.11 +1.6 1,071,864 - HP15_1051 0.14 -0.2 1,071,935 + HP15_1051 0.33 +0.3 1,071,964 - HP15_1051 0.40 +0.9 1,071,984 - HP15_1051 0.46 +0.6 1,072,070 - HP15_1051 0.69 +0.0
Or see this region's nucleotide sequence