Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3531 and Dsui_3532 overlap by 4 nucleotides Dsui_3532 and Dsui_3533 overlap by 1 nucleotides Dsui_3533 and Dsui_3534 are separated by 97 nucleotides
Dsui_3531: Dsui_3531 - Protein of unknown function (DUF3619), at 3,797,570 to 3,797,941
_3531
Dsui_3532: Dsui_3532 - Protein of unknown function (DUF3106), at 3,797,938 to 3,798,663
_3532
Dsui_3533: Dsui_3533 - putative membrane protein/domain protein, at 3,798,663 to 3,799,142
_3533
Dsui_3534: Dsui_3534 - putative permease, at 3,799,240 to 3,800,346
_3534
Position (kb)
3798
3799
3800 Strain fitness (log2 ratio)
-2
-1
0
1 at 3797.761 kb on + strand, within Dsui_3531 at 3797.775 kb on + strand, within Dsui_3531 at 3797.779 kb on + strand, within Dsui_3531 at 3797.787 kb on - strand, within Dsui_3531 at 3797.916 kb on + strand at 3798.249 kb on + strand, within Dsui_3532 at 3798.366 kb on + strand, within Dsui_3532 at 3798.374 kb on - strand, within Dsui_3532 at 3798.478 kb on - strand, within Dsui_3532 at 3798.532 kb on + strand, within Dsui_3532 at 3798.569 kb on - strand, within Dsui_3532 at 3798.684 kb on + strand at 3798.715 kb on + strand, within Dsui_3533 at 3798.750 kb on + strand, within Dsui_3533 at 3798.856 kb on + strand, within Dsui_3533 at 3798.927 kb on + strand, within Dsui_3533 at 3798.928 kb on + strand, within Dsui_3533 at 3799.017 kb on + strand, within Dsui_3533 at 3799.017 kb on + strand, within Dsui_3533 at 3799.061 kb on - strand, within Dsui_3533 at 3799.066 kb on - strand, within Dsui_3533
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 3,797,761 + Dsui_3531 0.51 -1.4 3,797,775 + Dsui_3531 0.55 +0.0 3,797,779 + Dsui_3531 0.56 -0.4 3,797,787 - Dsui_3531 0.58 -0.6 3,797,916 + -1.3 3,798,249 + Dsui_3532 0.43 +0.2 3,798,366 + Dsui_3532 0.59 -0.4 3,798,374 - Dsui_3532 0.60 -2.2 3,798,478 - Dsui_3532 0.74 -0.3 3,798,532 + Dsui_3532 0.82 -0.1 3,798,569 - Dsui_3532 0.87 -0.3 3,798,684 + -0.4 3,798,715 + Dsui_3533 0.11 +0.1 3,798,750 + Dsui_3533 0.18 -1.4 3,798,856 + Dsui_3533 0.40 +0.1 3,798,927 + Dsui_3533 0.55 -0.0 3,798,928 + Dsui_3533 0.55 -0.5 3,799,017 + Dsui_3533 0.74 -0.7 3,799,017 + Dsui_3533 0.74 -0.7 3,799,061 - Dsui_3533 0.83 -0.6 3,799,066 - Dsui_3533 0.84 -0.2
Or see this region's nucleotide sequence