Strain Fitness in Dechlorosoma suillum PS around Dsui_2593

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2592 and Dsui_2593 are separated by 27 nucleotidesDsui_2593 and Dsui_2594 are separated by 12 nucleotidesDsui_2594 and Dsui_2595 are separated by 16 nucleotides Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720 _2592 Dsui_2593: Dsui_2593 - PilS N terminal protein, at 2,748,748 to 2,749,287 _2593 Dsui_2594: Dsui_2594 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,749,300 to 2,750,256 _2594 Dsui_2595: Dsui_2595 - type II secretory pathway, pseudopilin PulG, at 2,750,273 to 2,751,646 _2595 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -2 -1 0 1 2at 2747.771 kb on - strand, within Dsui_2592at 2747.801 kb on - strand, within Dsui_2592at 2747.989 kb on + strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.046 kb on + strand, within Dsui_2592at 2748.065 kb on - strand, within Dsui_2592at 2748.084 kb on + strand, within Dsui_2592at 2748.261 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.324 kb on - strand, within Dsui_2592at 2748.334 kb on + strand, within Dsui_2592at 2748.357 kb on + strand, within Dsui_2592at 2748.373 kb on - strand, within Dsui_2592at 2748.487 kb on - strand, within Dsui_2592at 2748.638 kb on - strandat 2748.658 kb on - strandat 2748.669 kb on - strandat 2748.678 kb on + strandat 2748.683 kb on + strandat 2748.720 kb on + strandat 2748.818 kb on - strand, within Dsui_2593at 2748.820 kb on - strand, within Dsui_2593at 2748.834 kb on + strand, within Dsui_2593at 2748.842 kb on - strand, within Dsui_2593at 2748.882 kb on + strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.895 kb on - strand, within Dsui_2593at 2749.105 kb on + strand, within Dsui_2593at 2749.126 kb on + strand, within Dsui_2593at 2749.199 kb on - strandat 2749.210 kb on + strand, within Dsui_2593at 2749.210 kb on + strand, within Dsui_2593at 2749.218 kb on - strand, within Dsui_2593at 2749.235 kb on - strandat 2749.309 kb on + strandat 2749.392 kb on + strandat 2749.400 kb on - strand, within Dsui_2594at 2749.580 kb on + strand, within Dsui_2594at 2749.704 kb on + strand, within Dsui_2594at 2749.732 kb on - strand, within Dsui_2594at 2749.742 kb on + strand, within Dsui_2594at 2749.742 kb on + strand, within Dsui_2594at 2749.742 kb on + strand, within Dsui_2594at 2749.747 kb on + strand, within Dsui_2594at 2749.747 kb on + strand, within Dsui_2594at 2749.748 kb on + strand, within Dsui_2594at 2749.750 kb on - strand, within Dsui_2594at 2749.755 kb on - strand, within Dsui_2594at 2749.800 kb on - strand, within Dsui_2594at 2749.938 kb on + strand, within Dsui_2594

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,747,771 - Dsui_2592 0.15 +0.1
2,747,801 - Dsui_2592 0.17 +0.6
2,747,989 + Dsui_2592 0.34 -0.8
2,748,044 - Dsui_2592 0.39 +0.5
2,748,044 - Dsui_2592 0.39 -0.5
2,748,046 + Dsui_2592 0.39 +0.6
2,748,065 - Dsui_2592 0.41 -0.2
2,748,084 + Dsui_2592 0.43 -0.8
2,748,261 - Dsui_2592 0.59 +1.0
2,748,314 - Dsui_2592 0.63 -0.6
2,748,314 - Dsui_2592 0.63 +0.5
2,748,324 - Dsui_2592 0.64 +0.6
2,748,334 + Dsui_2592 0.65 -1.1
2,748,357 + Dsui_2592 0.67 +1.8
2,748,373 - Dsui_2592 0.69 -0.3
2,748,487 - Dsui_2592 0.79 +0.5
2,748,638 - -2.1
2,748,658 - -0.2
2,748,669 - +0.7
2,748,678 + -0.5
2,748,683 + -0.3
2,748,720 + +0.0
2,748,818 - Dsui_2593 0.13 -0.0
2,748,820 - Dsui_2593 0.13 -1.1
2,748,834 + Dsui_2593 0.16 -0.9
2,748,842 - Dsui_2593 0.17 -0.6
2,748,882 + Dsui_2593 0.25 -1.1
2,748,890 - Dsui_2593 0.26 +0.0
2,748,890 - Dsui_2593 0.26 -0.7
2,748,890 - Dsui_2593 0.26 -2.1
2,748,895 - Dsui_2593 0.27 -0.8
2,749,105 + Dsui_2593 0.66 -1.7
2,749,126 + Dsui_2593 0.70 +1.0
2,749,199 - +1.5
2,749,210 + Dsui_2593 0.86 -1.9
2,749,210 + Dsui_2593 0.86 +0.2
2,749,218 - Dsui_2593 0.87 -0.8
2,749,235 - +1.3
2,749,309 + -1.0
2,749,392 + -0.2
2,749,400 - Dsui_2594 0.10 +1.3
2,749,580 + Dsui_2594 0.29 +0.8
2,749,704 + Dsui_2594 0.42 -0.1
2,749,732 - Dsui_2594 0.45 -0.5
2,749,742 + Dsui_2594 0.46 +0.5
2,749,742 + Dsui_2594 0.46 -0.5
2,749,742 + Dsui_2594 0.46 +1.4
2,749,747 + Dsui_2594 0.47 +1.0
2,749,747 + Dsui_2594 0.47 +0.0
2,749,748 + Dsui_2594 0.47 +0.0
2,749,750 - Dsui_2594 0.47 -0.5
2,749,755 - Dsui_2594 0.48 +1.0
2,749,800 - Dsui_2594 0.52 -0.8
2,749,938 + Dsui_2594 0.67 -2.3

Or see this region's nucleotide sequence