Strain Fitness in Dechlorosoma suillum PS around Dsui_2590

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2589 and Dsui_2590 are separated by 2 nucleotidesDsui_2590 and Dsui_2591 are separated by 612 nucleotides Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994 _2589 Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409 _2590 Dsui_2591: Dsui_2591 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,746,022 to 2,747,608 _2591 Position (kb) 2743 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2743.312 kb on - strandat 2743.472 kb on + strand, within Dsui_2589at 2743.552 kb on + strand, within Dsui_2589at 2743.560 kb on - strand, within Dsui_2589at 2743.641 kb on - strand, within Dsui_2589at 2743.652 kb on - strand, within Dsui_2589at 2743.654 kb on + strand, within Dsui_2589at 2743.662 kb on - strand, within Dsui_2589at 2743.666 kb on + strand, within Dsui_2589at 2743.676 kb on + strand, within Dsui_2589at 2743.678 kb on + strand, within Dsui_2589at 2743.678 kb on + strand, within Dsui_2589at 2743.679 kb on - strand, within Dsui_2589at 2743.768 kb on + strand, within Dsui_2589at 2743.768 kb on + strand, within Dsui_2589at 2744.026 kb on - strandat 2744.408 kb on + strand, within Dsui_2590at 2744.497 kb on - strand, within Dsui_2590at 2744.571 kb on - strand, within Dsui_2590at 2744.573 kb on + strand, within Dsui_2590at 2744.676 kb on - strand, within Dsui_2590at 2744.732 kb on + strand, within Dsui_2590at 2744.735 kb on + strandat 2744.752 kb on + strand, within Dsui_2590at 2744.762 kb on - strand, within Dsui_2590at 2744.855 kb on + strand, within Dsui_2590at 2744.932 kb on + strandat 2745.216 kb on - strand, within Dsui_2590at 2745.221 kb on - strand, within Dsui_2590at 2745.274 kb on + strandat 2745.394 kb on + strandat 2745.572 kb on - strandat 2745.601 kb on - strandat 2745.787 kb on + strandat 2745.846 kb on + strandat 2745.872 kb on + strandat 2745.914 kb on + strandat 2746.008 kb on + strandat 2746.088 kb on + strandat 2746.142 kb on - strandat 2746.148 kb on + strandat 2746.217 kb on + strand, within Dsui_2591

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
remove
2,743,312 - -0.8
2,743,472 + Dsui_2589 0.70 +1.5
2,743,552 + Dsui_2589 0.74 +2.1
2,743,560 - Dsui_2589 0.75 +1.6
2,743,641 - Dsui_2589 0.79 +0.6
2,743,652 - Dsui_2589 0.80 +0.6
2,743,654 + Dsui_2589 0.80 +0.1
2,743,662 - Dsui_2589 0.81 -0.8
2,743,666 + Dsui_2589 0.81 -1.3
2,743,676 + Dsui_2589 0.81 +0.6
2,743,678 + Dsui_2589 0.82 +0.1
2,743,678 + Dsui_2589 0.82 -0.7
2,743,679 - Dsui_2589 0.82 +0.1
2,743,768 + Dsui_2589 0.87 -0.5
2,743,768 + Dsui_2589 0.87 -0.3
2,744,026 - +0.7
2,744,408 + Dsui_2590 0.29 -1.5
2,744,497 - Dsui_2590 0.35 +0.0
2,744,571 - Dsui_2590 0.41 +0.5
2,744,573 + Dsui_2590 0.41 -1.5
2,744,676 - Dsui_2590 0.48 -0.0
2,744,732 + Dsui_2590 0.52 -0.3
2,744,735 + +1.6
2,744,752 + Dsui_2590 0.53 +1.5
2,744,762 - Dsui_2590 0.54 +1.3
2,744,855 + Dsui_2590 0.61 -0.4
2,744,932 + +1.5
2,745,216 - Dsui_2590 0.86 -1.7
2,745,221 - Dsui_2590 0.87 -0.5
2,745,274 + +1.5
2,745,394 + +0.6
2,745,572 - -0.0
2,745,601 - -1.6
2,745,787 + +0.9
2,745,846 + -2.7
2,745,872 + -1.0
2,745,914 + +3.0
2,746,008 + +0.2
2,746,088 + -0.2
2,746,142 - +2.0
2,746,148 + +0.4
2,746,217 + Dsui_2591 0.12 +1.0

Or see this region's nucleotide sequence