Strain Fitness in Dechlorosoma suillum PS around Dsui_2586

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2585 and Dsui_2586 overlap by 4 nucleotidesDsui_2586 and Dsui_2587 are separated by 1 nucleotides Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075 _2585 Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058 _2586 Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385 _2587 Position (kb) 2739 2740 2741Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2738.157 kb on + strandat 2738.225 kb on - strandat 2738.225 kb on - strandat 2738.329 kb on - strandat 2738.329 kb on - strandat 2738.337 kb on + strandat 2738.414 kb on - strandat 2738.423 kb on - strandat 2738.435 kb on - strandat 2738.507 kb on + strand, within Dsui_2585at 2738.507 kb on + strand, within Dsui_2585at 2738.515 kb on + strand, within Dsui_2585at 2738.515 kb on - strand, within Dsui_2585at 2738.515 kb on - strand, within Dsui_2585at 2738.557 kb on - strand, within Dsui_2585at 2738.593 kb on - strand, within Dsui_2585at 2738.794 kb on - strand, within Dsui_2585at 2738.828 kb on + strand, within Dsui_2585at 2738.925 kb on + strand, within Dsui_2585at 2738.943 kb on + strand, within Dsui_2585at 2738.943 kb on + strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.990 kb on + strand, within Dsui_2585at 2738.990 kb on + strand, within Dsui_2585at 2739.138 kb on - strandat 2739.165 kb on + strandat 2739.171 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.289 kb on + strand, within Dsui_2586at 2739.361 kb on + strand, within Dsui_2586at 2739.427 kb on + strand, within Dsui_2586at 2739.430 kb on - strand, within Dsui_2586at 2739.773 kb on - strand, within Dsui_2586at 2739.899 kb on + strand, within Dsui_2586at 2739.942 kb on - strand, within Dsui_2586at 2740.011 kb on - strandat 2740.069 kb on - strandat 2740.219 kb on - strand, within Dsui_2587at 2740.285 kb on - strand, within Dsui_2587at 2740.285 kb on - strand, within Dsui_2587at 2740.362 kb on - strand, within Dsui_2587at 2740.471 kb on + strandat 2740.480 kb on - strand, within Dsui_2587at 2740.508 kb on - strand, within Dsui_2587at 2740.541 kb on + strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.631 kb on - strand, within Dsui_2587at 2740.690 kb on - strand, within Dsui_2587at 2740.741 kb on - strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.850 kb on + strand, within Dsui_2587at 2740.851 kb on - strand, within Dsui_2587at 2740.902 kb on - strand, within Dsui_2587at 2740.964 kb on - strand, within Dsui_2587at 2740.978 kb on + strand, within Dsui_2587at 2740.986 kb on - strand, within Dsui_2587

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,738,157 + -0.5
2,738,225 - +0.1
2,738,225 - +0.2
2,738,329 - +1.1
2,738,329 - -0.4
2,738,337 + +2.1
2,738,414 - +0.1
2,738,423 - +0.5
2,738,435 - +1.3
2,738,507 + Dsui_2585 0.19 -1.5
2,738,507 + Dsui_2585 0.19 +0.2
2,738,515 + Dsui_2585 0.20 +0.3
2,738,515 - Dsui_2585 0.20 -0.4
2,738,515 - Dsui_2585 0.20 -1.7
2,738,557 - Dsui_2585 0.26 +2.1
2,738,593 - Dsui_2585 0.31 +0.5
2,738,794 - Dsui_2585 0.60 +0.5
2,738,828 + Dsui_2585 0.65 +0.1
2,738,925 + Dsui_2585 0.79 -0.5
2,738,943 + Dsui_2585 0.81 +0.6
2,738,943 + Dsui_2585 0.81 +0.5
2,738,951 - Dsui_2585 0.82 +0.8
2,738,951 - Dsui_2585 0.82 -0.2
2,738,951 - Dsui_2585 0.82 -0.5
2,738,951 - Dsui_2585 0.82 +0.7
2,738,990 + Dsui_2585 0.88 +0.1
2,738,990 + Dsui_2585 0.88 -0.7
2,739,138 - +2.1
2,739,165 + +0.8
2,739,171 - Dsui_2586 0.10 -0.5
2,739,258 - Dsui_2586 0.19 -1.1
2,739,258 - Dsui_2586 0.19 +2.1
2,739,289 + Dsui_2586 0.22 +0.1
2,739,361 + Dsui_2586 0.29 +3.9
2,739,427 + Dsui_2586 0.36 -0.8
2,739,430 - Dsui_2586 0.36 -1.4
2,739,773 - Dsui_2586 0.71 -1.6
2,739,899 + Dsui_2586 0.84 -1.9
2,739,942 - Dsui_2586 0.88 +1.1
2,740,011 - +0.2
2,740,069 - +1.3
2,740,219 - Dsui_2587 0.12 +0.1
2,740,285 - Dsui_2587 0.17 +1.2
2,740,285 - Dsui_2587 0.17 +0.1
2,740,362 - Dsui_2587 0.23 +0.0
2,740,471 + +0.1
2,740,480 - Dsui_2587 0.32 +0.1
2,740,508 - Dsui_2587 0.34 +0.5
2,740,541 + Dsui_2587 0.36 +0.5
2,740,572 - Dsui_2587 0.39 -0.1
2,740,572 - Dsui_2587 0.39 +0.6
2,740,631 - Dsui_2587 0.43 +1.4
2,740,690 - Dsui_2587 0.48 -0.9
2,740,741 - Dsui_2587 0.51 +0.1
2,740,843 + Dsui_2587 0.59 +0.5
2,740,843 + Dsui_2587 0.59 -0.9
2,740,850 + Dsui_2587 0.60 +2.5
2,740,851 - Dsui_2587 0.60 -0.6
2,740,902 - Dsui_2587 0.63 -0.3
2,740,964 - Dsui_2587 0.68 +0.4
2,740,978 + Dsui_2587 0.69 -0.3
2,740,986 - Dsui_2587 0.70 +0.4

Or see this region's nucleotide sequence