Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2585 and Dsui_2586 overlap by 4 nucleotides Dsui_2586 and Dsui_2587 are separated by 1 nucleotides
Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075
_2585
Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058
_2586
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Position (kb)
2739
2740
2741 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2738.157 kb on + strand at 2738.225 kb on - strand at 2738.225 kb on - strand at 2738.329 kb on - strand at 2738.329 kb on - strand at 2738.337 kb on + strand at 2738.414 kb on - strand at 2738.423 kb on - strand at 2738.435 kb on - strand at 2738.507 kb on + strand, within Dsui_2585 at 2738.507 kb on + strand, within Dsui_2585 at 2738.515 kb on + strand, within Dsui_2585 at 2738.515 kb on - strand, within Dsui_2585 at 2738.515 kb on - strand, within Dsui_2585 at 2738.557 kb on - strand, within Dsui_2585 at 2738.593 kb on - strand, within Dsui_2585 at 2738.794 kb on - strand, within Dsui_2585 at 2738.828 kb on + strand, within Dsui_2585 at 2738.925 kb on + strand, within Dsui_2585 at 2738.943 kb on + strand, within Dsui_2585 at 2738.943 kb on + strand, within Dsui_2585 at 2738.951 kb on - strand, within Dsui_2585 at 2738.951 kb on - strand, within Dsui_2585 at 2738.951 kb on - strand, within Dsui_2585 at 2738.951 kb on - strand, within Dsui_2585 at 2738.990 kb on + strand, within Dsui_2585 at 2738.990 kb on + strand, within Dsui_2585 at 2739.138 kb on - strand at 2739.165 kb on + strand at 2739.171 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.289 kb on + strand, within Dsui_2586 at 2739.361 kb on + strand, within Dsui_2586 at 2739.427 kb on + strand, within Dsui_2586 at 2739.430 kb on - strand, within Dsui_2586 at 2739.773 kb on - strand, within Dsui_2586 at 2739.899 kb on + strand, within Dsui_2586 at 2739.942 kb on - strand, within Dsui_2586 at 2740.011 kb on - strand at 2740.069 kb on - strand at 2740.219 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.362 kb on - strand, within Dsui_2587 at 2740.471 kb on + strand at 2740.480 kb on - strand, within Dsui_2587 at 2740.508 kb on - strand, within Dsui_2587 at 2740.541 kb on + strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.631 kb on - strand, within Dsui_2587 at 2740.690 kb on - strand, within Dsui_2587 at 2740.741 kb on - strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.850 kb on + strand, within Dsui_2587 at 2740.851 kb on - strand, within Dsui_2587 at 2740.902 kb on - strand, within Dsui_2587 at 2740.964 kb on - strand, within Dsui_2587 at 2740.978 kb on + strand, within Dsui_2587 at 2740.986 kb on - strand, within Dsui_2587
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 2,738,157 + -0.5 2,738,225 - +0.1 2,738,225 - +0.2 2,738,329 - +1.1 2,738,329 - -0.4 2,738,337 + +2.1 2,738,414 - +0.1 2,738,423 - +0.5 2,738,435 - +1.3 2,738,507 + Dsui_2585 0.19 -1.5 2,738,507 + Dsui_2585 0.19 +0.2 2,738,515 + Dsui_2585 0.20 +0.3 2,738,515 - Dsui_2585 0.20 -0.4 2,738,515 - Dsui_2585 0.20 -1.7 2,738,557 - Dsui_2585 0.26 +2.1 2,738,593 - Dsui_2585 0.31 +0.5 2,738,794 - Dsui_2585 0.60 +0.5 2,738,828 + Dsui_2585 0.65 +0.1 2,738,925 + Dsui_2585 0.79 -0.5 2,738,943 + Dsui_2585 0.81 +0.6 2,738,943 + Dsui_2585 0.81 +0.5 2,738,951 - Dsui_2585 0.82 +0.8 2,738,951 - Dsui_2585 0.82 -0.2 2,738,951 - Dsui_2585 0.82 -0.5 2,738,951 - Dsui_2585 0.82 +0.7 2,738,990 + Dsui_2585 0.88 +0.1 2,738,990 + Dsui_2585 0.88 -0.7 2,739,138 - +2.1 2,739,165 + +0.8 2,739,171 - Dsui_2586 0.10 -0.5 2,739,258 - Dsui_2586 0.19 -1.1 2,739,258 - Dsui_2586 0.19 +2.1 2,739,289 + Dsui_2586 0.22 +0.1 2,739,361 + Dsui_2586 0.29 +3.9 2,739,427 + Dsui_2586 0.36 -0.8 2,739,430 - Dsui_2586 0.36 -1.4 2,739,773 - Dsui_2586 0.71 -1.6 2,739,899 + Dsui_2586 0.84 -1.9 2,739,942 - Dsui_2586 0.88 +1.1 2,740,011 - +0.2 2,740,069 - +1.3 2,740,219 - Dsui_2587 0.12 +0.1 2,740,285 - Dsui_2587 0.17 +1.2 2,740,285 - Dsui_2587 0.17 +0.1 2,740,362 - Dsui_2587 0.23 +0.0 2,740,471 + +0.1 2,740,480 - Dsui_2587 0.32 +0.1 2,740,508 - Dsui_2587 0.34 +0.5 2,740,541 + Dsui_2587 0.36 +0.5 2,740,572 - Dsui_2587 0.39 -0.1 2,740,572 - Dsui_2587 0.39 +0.6 2,740,631 - Dsui_2587 0.43 +1.4 2,740,690 - Dsui_2587 0.48 -0.9 2,740,741 - Dsui_2587 0.51 +0.1 2,740,843 + Dsui_2587 0.59 +0.5 2,740,843 + Dsui_2587 0.59 -0.9 2,740,850 + Dsui_2587 0.60 +2.5 2,740,851 - Dsui_2587 0.60 -0.6 2,740,902 - Dsui_2587 0.63 -0.3 2,740,964 - Dsui_2587 0.68 +0.4 2,740,978 + Dsui_2587 0.69 -0.3 2,740,986 - Dsui_2587 0.70 +0.4
Or see this region's nucleotide sequence