Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1483 and Dsui_1484 are separated by 525 nucleotides Dsui_1484 and Dsui_1485 are separated by 92 nucleotides Dsui_1485 and Dsui_1488 are separated by 734 nucleotides
Dsui_1483: Dsui_1483 - putative transcription regulator containing HTH domain, at 1,547,546 to 1,548,760
_1483
Dsui_1484: Dsui_1484 - hypothetical protein, at 1,549,286 to 1,549,444
_1484
Dsui_1485: Dsui_1485 - NC domain protein, at 1,549,537 to 1,549,905
_1485
Dsui_1488: Dsui_1488 - putative metal-dependent hydrolase, at 1,550,640 to 1,551,002
_1488
Position (kb)
1549
1550 Strain fitness (log2 ratio)
-1
0
1 at 1548.731 kb on + strand at 1548.896 kb on - strand at 1548.969 kb on - strand at 1548.971 kb on + strand at 1549.081 kb on + strand at 1549.110 kb on - strand at 1549.127 kb on + strand at 1549.160 kb on - strand at 1549.247 kb on - strand at 1549.495 kb on + strand at 1549.514 kb on - strand at 1549.519 kb on - strand at 1549.548 kb on + strand at 1549.599 kb on + strand, within Dsui_1485 at 1549.607 kb on - strand, within Dsui_1485 at 1549.757 kb on - strand, within Dsui_1485 at 1549.851 kb on + strand, within Dsui_1485 at 1549.893 kb on - strand at 1549.976 kb on + strand at 1550.007 kb on - strand at 1550.034 kb on - strand at 1550.072 kb on + strand at 1550.140 kb on - strand at 1550.184 kb on + strand at 1550.221 kb on - strand at 1550.273 kb on - strand at 1550.278 kb on - strand at 1550.411 kb on + strand at 1550.419 kb on - strand at 1550.690 kb on - strand, within Dsui_1488 at 1550.822 kb on + strand, within Dsui_1488 at 1550.894 kb on - strand, within Dsui_1488
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 1,548,731 + +0.5 1,548,896 - +0.2 1,548,969 - -0.0 1,548,971 + -0.3 1,549,081 + -0.5 1,549,110 - +0.9 1,549,127 + -0.5 1,549,160 - -0.0 1,549,247 - -0.5 1,549,495 + +0.1 1,549,514 - +0.3 1,549,519 - -0.2 1,549,548 + -0.1 1,549,599 + Dsui_1485 0.17 +0.0 1,549,607 - Dsui_1485 0.19 +0.3 1,549,757 - Dsui_1485 0.60 +0.3 1,549,851 + Dsui_1485 0.85 +0.0 1,549,893 - -0.1 1,549,976 + -0.4 1,550,007 - -0.1 1,550,034 - +0.8 1,550,072 + +0.2 1,550,140 - +0.7 1,550,184 + +0.2 1,550,221 - +0.2 1,550,273 - -0.5 1,550,278 - -0.5 1,550,411 + -0.5 1,550,419 - +0.3 1,550,690 - Dsui_1488 0.14 -1.5 1,550,822 + Dsui_1488 0.50 -0.1 1,550,894 - Dsui_1488 0.70 -0.5
Or see this region's nucleotide sequence