Strain Fitness in Dechlorosoma suillum PS around Dsui_1485

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1483 and Dsui_1484 are separated by 525 nucleotidesDsui_1484 and Dsui_1485 are separated by 92 nucleotidesDsui_1485 and Dsui_1488 are separated by 734 nucleotides Dsui_1483: Dsui_1483 - putative transcription regulator containing HTH domain, at 1,547,546 to 1,548,760 _1483 Dsui_1484: Dsui_1484 - hypothetical protein, at 1,549,286 to 1,549,444 _1484 Dsui_1485: Dsui_1485 - NC domain protein, at 1,549,537 to 1,549,905 _1485 Dsui_1488: Dsui_1488 - putative metal-dependent hydrolase, at 1,550,640 to 1,551,002 _1488 Position (kb) 1549 1550Strain fitness (log2 ratio) -1 0 1at 1548.731 kb on + strandat 1548.896 kb on - strandat 1548.969 kb on - strandat 1548.971 kb on + strandat 1549.081 kb on + strandat 1549.110 kb on - strandat 1549.127 kb on + strandat 1549.160 kb on - strandat 1549.247 kb on - strandat 1549.495 kb on + strandat 1549.514 kb on - strandat 1549.519 kb on - strandat 1549.548 kb on + strandat 1549.599 kb on + strand, within Dsui_1485at 1549.607 kb on - strand, within Dsui_1485at 1549.757 kb on - strand, within Dsui_1485at 1549.851 kb on + strand, within Dsui_1485at 1549.893 kb on - strandat 1549.976 kb on + strandat 1550.007 kb on - strandat 1550.034 kb on - strandat 1550.072 kb on + strandat 1550.140 kb on - strandat 1550.184 kb on + strandat 1550.221 kb on - strandat 1550.273 kb on - strandat 1550.278 kb on - strandat 1550.411 kb on + strandat 1550.419 kb on - strandat 1550.690 kb on - strand, within Dsui_1488at 1550.822 kb on + strand, within Dsui_1488at 1550.894 kb on - strand, within Dsui_1488

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,548,731 + +0.5
1,548,896 - +0.2
1,548,969 - -0.0
1,548,971 + -0.3
1,549,081 + -0.5
1,549,110 - +0.9
1,549,127 + -0.5
1,549,160 - -0.0
1,549,247 - -0.5
1,549,495 + +0.1
1,549,514 - +0.3
1,549,519 - -0.2
1,549,548 + -0.1
1,549,599 + Dsui_1485 0.17 +0.0
1,549,607 - Dsui_1485 0.19 +0.3
1,549,757 - Dsui_1485 0.60 +0.3
1,549,851 + Dsui_1485 0.85 +0.0
1,549,893 - -0.1
1,549,976 + -0.4
1,550,007 - -0.1
1,550,034 - +0.8
1,550,072 + +0.2
1,550,140 - +0.7
1,550,184 + +0.2
1,550,221 - +0.2
1,550,273 - -0.5
1,550,278 - -0.5
1,550,411 + -0.5
1,550,419 - +0.3
1,550,690 - Dsui_1488 0.14 -1.5
1,550,822 + Dsui_1488 0.50 -0.1
1,550,894 - Dsui_1488 0.70 -0.5

Or see this region's nucleotide sequence