Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1112 and Dsui_1113 are separated by 77 nucleotides Dsui_1113 and Dsui_1114 are separated by 162 nucleotides
Dsui_1112: Dsui_1112 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,158,796 to 1,160,124
_1112
Dsui_1113: Dsui_1113 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,160,202 to 1,161,038
_1113
Dsui_1114: Dsui_1114 - coenzyme F390 synthetase, at 1,161,201 to 1,162,433
_1114
Position (kb)
1160
1161
1162 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1159.250 kb on + strand, within Dsui_1112 at 1159.298 kb on + strand, within Dsui_1112 at 1159.308 kb on + strand, within Dsui_1112 at 1159.533 kb on - strand, within Dsui_1112 at 1159.624 kb on + strand, within Dsui_1112 at 1159.771 kb on + strand, within Dsui_1112 at 1159.827 kb on + strand, within Dsui_1112 at 1159.878 kb on - strand, within Dsui_1112 at 1160.330 kb on + strand, within Dsui_1113 at 1160.511 kb on + strand, within Dsui_1113 at 1160.516 kb on + strand, within Dsui_1113 at 1160.534 kb on - strand, within Dsui_1113 at 1160.650 kb on + strand, within Dsui_1113 at 1160.709 kb on + strand, within Dsui_1113 at 1160.843 kb on + strand, within Dsui_1113 at 1160.920 kb on + strand, within Dsui_1113 at 1160.926 kb on - strand, within Dsui_1113 at 1160.962 kb on - strand at 1161.007 kb on - strand at 1161.044 kb on - strand at 1161.145 kb on - strand at 1161.146 kb on - strand at 1161.327 kb on - strand, within Dsui_1114 at 1161.461 kb on + strand, within Dsui_1114 at 1161.468 kb on + strand, within Dsui_1114 at 1161.488 kb on + strand, within Dsui_1114 at 1161.517 kb on + strand, within Dsui_1114 at 1161.617 kb on - strand, within Dsui_1114 at 1161.687 kb on - strand, within Dsui_1114 at 1161.732 kb on + strand, within Dsui_1114 at 1161.802 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.867 kb on - strand, within Dsui_1114 at 1161.886 kb on + strand, within Dsui_1114 at 1161.931 kb on + strand, within Dsui_1114 at 1161.938 kb on - strand, within Dsui_1114 at 1162.024 kb on - strand, within Dsui_1114
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 1,159,250 + Dsui_1112 0.34 +0.5 1,159,298 + Dsui_1112 0.38 -0.9 1,159,308 + Dsui_1112 0.39 -0.1 1,159,533 - Dsui_1112 0.55 +0.8 1,159,624 + Dsui_1112 0.62 -0.4 1,159,771 + Dsui_1112 0.73 -2.6 1,159,827 + Dsui_1112 0.78 -0.5 1,159,878 - Dsui_1112 0.81 -0.4 1,160,330 + Dsui_1113 0.15 -0.6 1,160,511 + Dsui_1113 0.37 -3.6 1,160,516 + Dsui_1113 0.38 -0.7 1,160,534 - Dsui_1113 0.40 +0.3 1,160,650 + Dsui_1113 0.54 -0.1 1,160,709 + Dsui_1113 0.61 -0.1 1,160,843 + Dsui_1113 0.77 -1.2 1,160,920 + Dsui_1113 0.86 -0.4 1,160,926 - Dsui_1113 0.86 -1.7 1,160,962 - -0.9 1,161,007 - +0.1 1,161,044 - -0.1 1,161,145 - +0.2 1,161,146 - -0.1 1,161,327 - Dsui_1114 0.10 +0.0 1,161,461 + Dsui_1114 0.21 -0.2 1,161,468 + Dsui_1114 0.22 -0.7 1,161,488 + Dsui_1114 0.23 +0.0 1,161,517 + Dsui_1114 0.26 -0.2 1,161,617 - Dsui_1114 0.34 -0.2 1,161,687 - Dsui_1114 0.39 +0.4 1,161,732 + Dsui_1114 0.43 -1.1 1,161,802 - Dsui_1114 0.49 -0.6 1,161,809 - Dsui_1114 0.49 +0.0 1,161,809 - Dsui_1114 0.49 -0.3 1,161,867 - Dsui_1114 0.54 -0.4 1,161,886 + Dsui_1114 0.56 +0.5 1,161,931 + Dsui_1114 0.59 -0.4 1,161,938 - Dsui_1114 0.60 -1.6 1,162,024 - Dsui_1114 0.67 +0.6
Or see this region's nucleotide sequence