Strain Fitness in Dechlorosoma suillum PS around Dsui_1113

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1112 and Dsui_1113 are separated by 77 nucleotidesDsui_1113 and Dsui_1114 are separated by 162 nucleotides Dsui_1112: Dsui_1112 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,158,796 to 1,160,124 _1112 Dsui_1113: Dsui_1113 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,160,202 to 1,161,038 _1113 Dsui_1114: Dsui_1114 - coenzyme F390 synthetase, at 1,161,201 to 1,162,433 _1114 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -3 -2 -1 0 1at 1159.250 kb on + strand, within Dsui_1112at 1159.298 kb on + strand, within Dsui_1112at 1159.308 kb on + strand, within Dsui_1112at 1159.533 kb on - strand, within Dsui_1112at 1159.624 kb on + strand, within Dsui_1112at 1159.771 kb on + strand, within Dsui_1112at 1159.827 kb on + strand, within Dsui_1112at 1159.878 kb on - strand, within Dsui_1112at 1160.330 kb on + strand, within Dsui_1113at 1160.511 kb on + strand, within Dsui_1113at 1160.516 kb on + strand, within Dsui_1113at 1160.534 kb on - strand, within Dsui_1113at 1160.650 kb on + strand, within Dsui_1113at 1160.709 kb on + strand, within Dsui_1113at 1160.843 kb on + strand, within Dsui_1113at 1160.920 kb on + strand, within Dsui_1113at 1160.926 kb on - strand, within Dsui_1113at 1160.962 kb on - strandat 1161.007 kb on - strandat 1161.044 kb on - strandat 1161.145 kb on - strandat 1161.146 kb on - strandat 1161.327 kb on - strand, within Dsui_1114at 1161.461 kb on + strand, within Dsui_1114at 1161.468 kb on + strand, within Dsui_1114at 1161.488 kb on + strand, within Dsui_1114at 1161.517 kb on + strand, within Dsui_1114at 1161.617 kb on - strand, within Dsui_1114at 1161.687 kb on - strand, within Dsui_1114at 1161.732 kb on + strand, within Dsui_1114at 1161.802 kb on - strand, within Dsui_1114at 1161.809 kb on - strand, within Dsui_1114at 1161.809 kb on - strand, within Dsui_1114at 1161.867 kb on - strand, within Dsui_1114at 1161.886 kb on + strand, within Dsui_1114at 1161.931 kb on + strand, within Dsui_1114at 1161.938 kb on - strand, within Dsui_1114at 1162.024 kb on - strand, within Dsui_1114

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,159,250 + Dsui_1112 0.34 +0.5
1,159,298 + Dsui_1112 0.38 -0.9
1,159,308 + Dsui_1112 0.39 -0.1
1,159,533 - Dsui_1112 0.55 +0.8
1,159,624 + Dsui_1112 0.62 -0.4
1,159,771 + Dsui_1112 0.73 -2.6
1,159,827 + Dsui_1112 0.78 -0.5
1,159,878 - Dsui_1112 0.81 -0.4
1,160,330 + Dsui_1113 0.15 -0.6
1,160,511 + Dsui_1113 0.37 -3.6
1,160,516 + Dsui_1113 0.38 -0.7
1,160,534 - Dsui_1113 0.40 +0.3
1,160,650 + Dsui_1113 0.54 -0.1
1,160,709 + Dsui_1113 0.61 -0.1
1,160,843 + Dsui_1113 0.77 -1.2
1,160,920 + Dsui_1113 0.86 -0.4
1,160,926 - Dsui_1113 0.86 -1.7
1,160,962 - -0.9
1,161,007 - +0.1
1,161,044 - -0.1
1,161,145 - +0.2
1,161,146 - -0.1
1,161,327 - Dsui_1114 0.10 +0.0
1,161,461 + Dsui_1114 0.21 -0.2
1,161,468 + Dsui_1114 0.22 -0.7
1,161,488 + Dsui_1114 0.23 +0.0
1,161,517 + Dsui_1114 0.26 -0.2
1,161,617 - Dsui_1114 0.34 -0.2
1,161,687 - Dsui_1114 0.39 +0.4
1,161,732 + Dsui_1114 0.43 -1.1
1,161,802 - Dsui_1114 0.49 -0.6
1,161,809 - Dsui_1114 0.49 +0.0
1,161,809 - Dsui_1114 0.49 -0.3
1,161,867 - Dsui_1114 0.54 -0.4
1,161,886 + Dsui_1114 0.56 +0.5
1,161,931 + Dsui_1114 0.59 -0.4
1,161,938 - Dsui_1114 0.60 -1.6
1,162,024 - Dsui_1114 0.67 +0.6

Or see this region's nucleotide sequence