Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1057 and Dsui_1058 are separated by 214 nucleotides Dsui_1058 and Dsui_1059 are separated by 3 nucleotides Dsui_1059 and Dsui_1060 overlap by 4 nucleotides
Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178
_1057
Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602
_1058
Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553
_1059
Dsui_1060: Dsui_1060 - putative ATPase (AAA+ superfamily), at 1,092,550 to 1,093,473
_1060
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-1
0
1 at 1090.403 kb on + strand at 1091.279 kb on + strand at 1091.413 kb on + strand at 1091.461 kb on + strand, within Dsui_1058 at 1091.558 kb on + strand, within Dsui_1058 at 1091.573 kb on - strand, within Dsui_1058 at 1091.596 kb on + strand at 1091.596 kb on + strand at 1091.604 kb on - strand at 1092.282 kb on - strand, within Dsui_1059 at 1092.357 kb on - strand, within Dsui_1059 at 1092.374 kb on - strand at 1092.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 1,090,403 + -0.9 1,091,279 + -0.2 1,091,413 + -0.1 1,091,461 + Dsui_1058 0.32 -0.7 1,091,558 + Dsui_1058 0.79 -0.3 1,091,573 - Dsui_1058 0.86 -1.1 1,091,596 + +0.2 1,091,596 + +0.4 1,091,604 - -0.6 1,092,282 - Dsui_1059 0.71 -0.5 1,092,357 - Dsui_1059 0.79 -0.1 1,092,374 - +1.1 1,092,561 + +0.8
Or see this region's nucleotide sequence