Strain Fitness in Dechlorosoma suillum PS around Dsui_0982

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0980 and Dsui_0981 are separated by 20 nucleotidesDsui_0981 and Dsui_0982 are separated by 63 nucleotidesDsui_0982 and Dsui_0983 are separated by 188 nucleotides Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907 _0980 Dsui_0981: Dsui_0981 - enoyl-CoA hydratase/carnithine racemase, at 1,007,928 to 1,008,719 _0981 Dsui_0982: Dsui_0982 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,008,783 to 1,010,786 _0982 Dsui_0983: Dsui_0983 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,010,975 to 1,013,275 _0983 Position (kb) 1008 1009 1010 1011Strain fitness (log2 ratio) -2 -1 0 1 2at 1007.790 kb on + strandat 1008.053 kb on + strand, within Dsui_0981at 1008.084 kb on - strand, within Dsui_0981at 1008.613 kb on + strand, within Dsui_0981at 1008.637 kb on - strand, within Dsui_0981at 1008.927 kb on + strandat 1009.031 kb on - strand, within Dsui_0982at 1009.295 kb on + strandat 1009.318 kb on - strandat 1009.385 kb on + strand, within Dsui_0982at 1009.476 kb on - strand, within Dsui_0982at 1009.486 kb on + strand, within Dsui_0982at 1009.646 kb on + strand, within Dsui_0982at 1009.703 kb on - strandat 1009.704 kb on - strand, within Dsui_0982at 1009.777 kb on + strand, within Dsui_0982at 1009.804 kb on - strand, within Dsui_0982at 1009.873 kb on + strand, within Dsui_0982at 1009.929 kb on - strand, within Dsui_0982at 1009.978 kb on - strand, within Dsui_0982at 1010.003 kb on - strand, within Dsui_0982at 1010.083 kb on + strand, within Dsui_0982at 1010.390 kb on + strand, within Dsui_0982at 1010.537 kb on - strand, within Dsui_0982at 1010.615 kb on + strandat 1010.686 kb on + strandat 1010.754 kb on - strandat 1010.780 kb on + strandat 1010.863 kb on + strandat 1010.876 kb on - strandat 1011.031 kb on + strandat 1011.114 kb on + strandat 1011.132 kb on + strandat 1011.132 kb on + strandat 1011.369 kb on - strand, within Dsui_0983at 1011.385 kb on + strand, within Dsui_0983at 1011.488 kb on - strand, within Dsui_0983at 1011.507 kb on + strand, within Dsui_0983at 1011.517 kb on + strand, within Dsui_0983at 1011.635 kb on - strand, within Dsui_0983at 1011.642 kb on + strand, within Dsui_0983at 1011.706 kb on + strand, within Dsui_0983at 1011.767 kb on - strand, within Dsui_0983

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,007,790 + +0.2
1,008,053 + Dsui_0981 0.16 -0.5
1,008,084 - Dsui_0981 0.20 -0.1
1,008,613 + Dsui_0981 0.86 +0.3
1,008,637 - Dsui_0981 0.90 +0.1
1,008,927 + -0.5
1,009,031 - Dsui_0982 0.12 -0.2
1,009,295 + +0.5
1,009,318 - -0.1
1,009,385 + Dsui_0982 0.30 -0.3
1,009,476 - Dsui_0982 0.35 -0.5
1,009,486 + Dsui_0982 0.35 -0.4
1,009,646 + Dsui_0982 0.43 +0.0
1,009,703 - -0.9
1,009,704 - Dsui_0982 0.46 -0.2
1,009,777 + Dsui_0982 0.50 -0.0
1,009,804 - Dsui_0982 0.51 -0.3
1,009,873 + Dsui_0982 0.54 -0.2
1,009,929 - Dsui_0982 0.57 +1.8
1,009,978 - Dsui_0982 0.60 +0.6
1,010,003 - Dsui_0982 0.61 -0.5
1,010,083 + Dsui_0982 0.65 +0.3
1,010,390 + Dsui_0982 0.80 +0.4
1,010,537 - Dsui_0982 0.88 -0.5
1,010,615 + -0.5
1,010,686 + -0.2
1,010,754 - -0.1
1,010,780 + -1.5
1,010,863 + -0.7
1,010,876 - +1.3
1,011,031 + +0.3
1,011,114 + -0.2
1,011,132 + +0.1
1,011,132 + -1.5
1,011,369 - Dsui_0983 0.17 -0.5
1,011,385 + Dsui_0983 0.18 -0.4
1,011,488 - Dsui_0983 0.22 -1.0
1,011,507 + Dsui_0983 0.23 -0.2
1,011,517 + Dsui_0983 0.24 -0.2
1,011,635 - Dsui_0983 0.29 -0.1
1,011,642 + Dsui_0983 0.29 -0.3
1,011,706 + Dsui_0983 0.32 -1.8
1,011,767 - Dsui_0983 0.34 -0.3

Or see this region's nucleotide sequence