Strain Fitness in Shewanella amazonensis SB2B around Sama_3086

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3084 and Sama_3085 overlap by 4 nucleotidesSama_3085 and Sama_3086 overlap by 14 nucleotidesSama_3086 and Sama_3087 overlap by 4 nucleotidesSama_3087 and Sama_3088 are separated by 111 nucleotides Sama_3084: Sama_3084 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 3,661,024 to 3,661,572 _3084 Sama_3085: Sama_3085 - hypothetical protein (RefSeq), at 3,661,569 to 3,662,126 _3085 Sama_3086: Sama_3086 - OstA-like protein (RefSeq), at 3,662,113 to 3,662,667 _3086 Sama_3087: Sama_3087 - ABC transporter, ATP-binding protein (RefSeq), at 3,662,664 to 3,663,395 _3087 Sama_3088: Sama_3088 - RNA polymerase factor sigma-54 (RefSeq), at 3,663,507 to 3,664,988 _3088 Position (kb) 3662 3663Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3663.393 kb on + strandat 3663.393 kb on + strandat 3663.393 kb on + strandat 3663.394 kb on - strandat 3663.394 kb on - strandat 3663.397 kb on + strandat 3663.397 kb on + strandat 3663.397 kb on + strandat 3663.397 kb on + strandat 3663.398 kb on - strandat 3663.398 kb on - strandat 3663.398 kb on - strandat 3663.398 kb on - strandat 3663.401 kb on + strandat 3663.401 kb on + strandat 3663.441 kb on - strandat 3663.441 kb on - strandat 3663.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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3,663,393 + -0.7
3,663,393 + +1.8
3,663,393 + +0.8
3,663,394 - +1.2
3,663,394 - +1.9
3,663,397 + -0.5
3,663,397 + +0.6
3,663,397 + -1.1
3,663,397 + -0.2
3,663,398 - +4.1
3,663,398 - +1.1
3,663,398 - +1.5
3,663,398 - +0.5
3,663,401 + -0.3
3,663,401 + +0.0
3,663,441 - +2.0
3,663,441 - +3.9
3,663,460 + -2.4

Or see this region's nucleotide sequence