Strain Fitness in Shewanella amazonensis SB2B around Sama_1005

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
1,215,867	+		Sama_1004	0.46	+5.2
1,215,867	+		Sama_1004	0.46	+7.3
1,215,868	-		Sama_1004	0.46	+5.3
1,215,868	-		Sama_1004	0.46	+5.7
1,216,020	+		Sama_1004	0.57	+4.4
1,216,020	+		Sama_1004	0.57	+4.4
1,216,021	-		Sama_1004	0.57	+3.5
1,216,072	+		Sama_1004	0.61	+5.6
1,216,072	+		Sama_1004	0.61	+4.5
1,216,073	-		Sama_1004	0.61	+5.2
1,216,073	-		Sama_1004	0.61	+5.5
1,216,073	-		Sama_1004	0.61	+4.2
1,216,075	+		Sama_1004	0.61	+4.8
1,216,075	+		Sama_1004	0.61	+5.4
1,216,076	-		Sama_1004	0.61	+3.2
1,216,076	-		Sama_1004	0.61	+6.3
1,216,076	-		Sama_1004	0.61	+4.9
1,216,077	+		Sama_1004	0.61	+6.9
1,216,077	+		Sama_1004	0.61	+4.4
1,216,077	+		Sama_1004	0.61	+6.4
1,216,077	+		Sama_1004	0.61	+5.1
1,216,078	-		Sama_1004	0.61	+4.9
1,216,078	-		Sama_1004	0.61	+5.3
1,216,078	-		Sama_1004	0.61	+5.0
1,216,088	+		Sama_1004	0.62	+6.5
1,216,105	-		Sama_1004	0.63	+4.4
1,216,105	-		Sama_1004	0.63	+5.6
1,216,111	+		Sama_1004	0.63	+4.2
1,216,112	-		Sama_1004	0.64	+6.2
1,216,112	-		Sama_1004	0.64	+5.6
1,216,112	-		Sama_1004	0.64	+3.7
1,216,112	-		Sama_1004	0.64	+4.9
1,216,112	-		Sama_1004	0.64	+5.2
1,216,208	-		Sama_1004	0.70	+3.3
1,216,241	-		Sama_1004	0.73	+5.4
1,216,272	-		Sama_1004	0.75	+4.8
1,216,318	+		Sama_1004	0.78	+3.1
1,216,318	+		Sama_1004	0.78	+3.1
1,216,318	+		Sama_1004	0.78	+5.4
1,216,319	-		Sama_1004	0.78	+4.7
1,216,390	-		Sama_1004	0.83	+5.0
1,216,434	+		Sama_1004	0.87	+5.3
1,216,434	+		Sama_1004	0.87	+3.8
1,216,435	-		Sama_1004	0.87	+5.0
1,216,435	-		Sama_1004	0.87	+5.4
1,216,468	+		Sama_1004	0.89	+5.9
1,216,469	-		Sama_1004	0.89	+4.2
1,216,469	-		Sama_1004	0.89	+4.9
1,216,469	-		Sama_1004	0.89	+5.1
1,216,469	-		Sama_1004	0.89	+4.6
1,216,492	+				+5.9
1,216,493	-				+5.1
1,216,522	-				+5.1
1,216,522	-				+3.4
1,216,540	-				+5.0
1,216,557	+				+4.5
1,216,569	+				+5.2
1,216,570	-				+3.0
1,216,616	-				+6.2
1,216,616	-				+5.5
1,216,621	+				+4.7
1,216,622	-				+3.9
1,216,622	-				+4.9
1,216,622	-				+1.5
1,216,622	-				+0.9
1,216,622	-				+5.7
1,216,622	-				+5.8
1,216,622	-				+4.9
1,216,641	-				-0.8
1,216,641	-				+1.1
1,216,641	-				+0.2
1,216,641	-				-1.4
1,216,685	+				+3.1
1,216,686	-				+0.9
1,216,712	+				-0.9
1,216,712	+				+0.5
1,216,713	-				+0.3
1,216,735	+				-1.0
1,216,736	-				-1.9
1,216,740	+				-0.2
1,216,741	-				+1.6
1,216,741	-				-0.7
1,216,764	+				-2.9
1,216,764	+				-1.5
1,216,765	-				-0.5
1,216,765	-				-0.0
1,216,765	-				+3.8
1,216,772	+				-2.2
1,216,772	+				-2.0
1,216,772	+				+1.0
1,216,791	+				-0.5
1,216,791	+				+0.6
1,216,792	-				+1.9
1,216,792	-				-1.0
1,216,804	+				-1.5
1,216,804	+				-0.9
1,216,804	+				+0.8
1,216,804	+				-0.9
1,216,806	+				+3.6
1,216,806	+				+2.1
1,216,806	+				-0.9
1,216,806	+				+1.3
1,216,806	+				+2.7
1,216,806	+				+0.0
1,216,806	+				-1.4
1,216,806	+				-1.0
1,216,807	-				-1.0
1,216,807	-				-0.6
1,216,807	-				+2.0
1,216,818	-				-1.5
1,216,818	-				+3.0
1,216,821	+				-0.4
1,216,821	+				-0.7
1,216,821	+				-1.1
1,216,822	-				+0.8
1,216,935	-		Sama_1005	0.10	-3.5
1,216,995	-		Sama_1005	0.17	+1.2
1,217,030	+		Sama_1005	0.22	+0.1
1,217,030	+		Sama_1005	0.22	+1.3
1,217,052	+		Sama_1005	0.24	-0.7
1,217,053	-		Sama_1005	0.24	-1.1
1,217,054	+		Sama_1005	0.24	+2.5
1,217,156	+		Sama_1005	0.37	+3.2
1,217,156	+		Sama_1005	0.37	-1.7
1,217,204	+		Sama_1005	0.42	-2.1
1,217,204	+		Sama_1005	0.42	-1.2
1,217,205	-		Sama_1005	0.42	+3.8
1,217,205	-		Sama_1005	0.42	+3.0
1,217,205	-		Sama_1005	0.42	-0.7
1,217,248	+		Sama_1005	0.47	-1.0
1,217,248	+		Sama_1005	0.47	+1.2
1,217,249	-		Sama_1005	0.48	-1.9
1,217,250	+		Sama_1005	0.48	-0.8
1,217,250	+		Sama_1005	0.48	-2.5
1,217,250	+		Sama_1005	0.48	-1.7
1,217,250	+		Sama_1005	0.48	-1.5
1,217,250	+		Sama_1005	0.48	-0.5
1,217,250	+		Sama_1005	0.48	-0.6
1,217,250	+		Sama_1005	0.48	-1.2
1,217,250	+		Sama_1005	0.48	+0.8
1,217,250	+		Sama_1005	0.48	-1.6
1,217,250	+		Sama_1005	0.48	-3.2
1,217,251	-		Sama_1005	0.48	-0.6
1,217,251	-		Sama_1005	0.48	+0.3
1,217,251	-		Sama_1005	0.48	+0.2
1,217,251	-		Sama_1005	0.48	-0.2
1,217,251	-		Sama_1005	0.48	-1.4
1,217,251	-		Sama_1005	0.48	-0.5
1,217,283	+		Sama_1005	0.52	+4.1
1,217,284	-		Sama_1005	0.52	+1.4
1,217,311	+		Sama_1005	0.55	-1.7
1,217,318	+		Sama_1005	0.56	-1.7
1,217,319	-		Sama_1005	0.56	-0.3
1,217,319	-		Sama_1005	0.56	+2.3
1,217,377	+		Sama_1005	0.63	-0.4
1,217,377	+		Sama_1005	0.63	+6.3
1,217,378	-		Sama_1005	0.63	-1.5
1,217,496	+		Sama_1005	0.77	-0.8
1,217,517	+		Sama_1005	0.79	+0.5
1,217,517	+		Sama_1005	0.79	+0.9
1,217,517	+		Sama_1005	0.79	+2.3
1,217,517	+		Sama_1005	0.79	+0.3
1,217,518	-		Sama_1005	0.79	+0.9
1,217,547	+		Sama_1005	0.83	+0.5
1,217,548	-		Sama_1005	0.83	+3.5
1,217,596	+		Sama_1005	0.89	+2.9
1,217,596	+		Sama_1005	0.89	-2.1
1,217,597	-		Sama_1005	0.89	-2.0
1,217,661	+				-1.6
1,217,661	+				+2.1
1,217,661	+				-2.8
1,217,662	-				-0.4
1,217,662	-				+2.8
1,217,662	-				+3.3
1,217,662	-				+1.5
1,217,662	-				-1.0
1,217,682	+				-0.7
1,217,682	+				+0.3
1,217,683	-				-1.7
1,217,688	+				-0.9
1,217,689	-				-0.5
1,217,689	-				-1.2
1,217,738	-				-1.5
1,217,738	-				+0.2
1,217,748	+				-1.9
1,217,748	+				-0.5
1,217,749	-				+1.3
1,217,749	-				+1.3
1,217,749	-				+0.4
1,217,764	+				+0.2
1,217,772	-				+0.5
1,217,811	+				+0.8
1,217,812	-				-0.5
1,217,812	-				-0.7
1,217,812	-				-1.1
1,217,840	+				-0.2
1,217,852	-				-1.0
1,217,893	+				-0.7
1,217,894	-				+1.8
1,217,973	+		Sama_1006	0.13	+1.9
1,217,973	+		Sama_1006	0.13	-1.7
1,217,973	+		Sama_1006	0.13	+3.2
1,217,973	+		Sama_1006	0.13	-0.5
1,217,974	-		Sama_1006	0.13	+1.7
1,217,974	-		Sama_1006	0.13	+1.7
1,217,974	-		Sama_1006	0.13	-0.3
1,217,974	-		Sama_1006	0.13	+2.0
1,217,974	-		Sama_1006	0.13	+0.9
1,217,983	+		Sama_1006	0.14	-0.0
1,217,983	+		Sama_1006	0.14	-0.3
1,217,983	+		Sama_1006	0.14	-0.0
1,217,984	-		Sama_1006	0.14	-0.7
1,217,984	-		Sama_1006	0.14	+1.2
1,217,984	-		Sama_1006	0.14	-1.6
1,217,984	-		Sama_1006	0.14	-0.2
1,217,995	+		Sama_1006	0.15	+1.2
1,217,995	+		Sama_1006	0.15	-1.8
1,217,996	-		Sama_1006	0.15	+0.8
1,217,996	-		Sama_1006	0.15	+0.3
1,217,996	-		Sama_1006	0.15	+1.7
1,217,996	-		Sama_1006	0.15	+0.7
1,218,008	-		Sama_1006	0.16	+4.5
1,218,052	+		Sama_1006	0.19	+1.6
1,218,053	-		Sama_1006	0.19	-2.4
1,218,087	+		Sama_1006	0.21	-1.9
1,218,087	+		Sama_1006	0.21	-2.3
1,218,087	+		Sama_1006	0.21	-1.5
1,218,088	-		Sama_1006	0.21	-1.0
1,218,088	-		Sama_1006	0.21	-3.0
1,218,088	-		Sama_1006	0.21	+0.2
1,218,088	-		Sama_1006	0.21	+2.0
1,218,091	-		Sama_1006	0.21	-0.1
1,218,091	-		Sama_1006	0.21	-0.3
1,218,091	-		Sama_1006	0.21	+0.8
1,218,091	-		Sama_1006	0.21	-0.7
1,218,093	+		Sama_1006	0.21	+0.6
1,218,093	+		Sama_1006	0.21	+0.6
1,218,093	+		Sama_1006	0.21	+0.9
1,218,093	+		Sama_1006	0.21	+1.5
1,218,093	+		Sama_1006	0.21	-1.0
1,218,093	+		Sama_1006	0.21	+1.1
1,218,093	+		Sama_1006	0.21	-1.9
1,218,093	+		Sama_1006	0.21	+0.5
1,218,093	+		Sama_1006	0.21	+0.0
1,218,094	-		Sama_1006	0.21	+4.4
1,218,094	-		Sama_1006	0.21	-0.7
1,218,094	-		Sama_1006	0.21	+1.9
1,218,118	-		Sama_1006	0.23	-0.9
1,218,118	-		Sama_1006	0.23	-1.9
1,218,162	+		Sama_1006	0.26	-1.5
1,218,162	+		Sama_1006	0.26	-1.7
1,218,163	-		Sama_1006	0.26	+0.6
1,218,163	-		Sama_1006	0.26	+2.7
1,218,177	+		Sama_1006	0.27	-0.1
1,218,177	+		Sama_1006	0.27	-0.8
1,218,240	-		Sama_1006	0.31	-0.6
1,218,280	+		Sama_1006	0.34	-2.1
1,218,281	-		Sama_1006	0.34	+1.5
1,218,307	+		Sama_1006	0.36	+2.2
1,218,308	-		Sama_1006	0.36	-1.1
1,218,336	+		Sama_1006	0.38	-2.1
1,218,337	-		Sama_1006	0.38	+1.3
1,218,337	-		Sama_1006	0.38	-0.6
1,218,347	+		Sama_1006	0.38	-2.0
1,218,348	-		Sama_1006	0.38	+2.1
1,218,412	+		Sama_1006	0.43	+4.2
1,218,412	+		Sama_1006	0.43	-1.6
1,218,412	+		Sama_1006	0.43	-0.4
1,218,413	-		Sama_1006	0.43	-0.3
1,218,413	-		Sama_1006	0.43	+1.1
1,218,413	-		Sama_1006	0.43	+1.1
1,218,413	-		Sama_1006	0.43	-1.0
1,218,413	-		Sama_1006	0.43	-1.5
1,218,413	-		Sama_1006	0.43	+0.6
1,218,436	+		Sama_1006	0.44	+3.0
1,218,436	+		Sama_1006	0.44	+5.2
1,218,436	+		Sama_1006	0.44	+0.4
1,218,436	+		Sama_1006	0.44	+1.7
1,218,436	+		Sama_1006	0.44	+1.0
1,218,436	+		Sama_1006	0.44	-1.8
1,218,437	-		Sama_1006	0.44	+2.7
1,218,437	-		Sama_1006	0.44	-2.9
1,218,437	-		Sama_1006	0.44	-1.5
1,218,437	-		Sama_1006	0.44	-0.8
1,218,437	-		Sama_1006	0.44	-0.2
1,218,449	+		Sama_1006	0.45	-1.2
1,218,523	+		Sama_1006	0.50	-0.3
1,218,533	+		Sama_1006	0.51	-0.5
1,218,534	-		Sama_1006	0.51	-0.4
1,218,542	+		Sama_1006	0.52	-2.7
1,218,542	+		Sama_1006	0.52	-0.8
1,218,542	+		Sama_1006	0.52	-0.5
1,218,542	+		Sama_1006	0.52	-2.5
1,218,543	-		Sama_1006	0.52	-1.9
1,218,543	-		Sama_1006	0.52	+1.1
1,218,543	-		Sama_1006	0.52	+0.5
1,218,595	+		Sama_1006	0.55	-0.4
1,218,628	-		Sama_1006	0.57	+1.4
1,218,659	+		Sama_1006	0.59	+2.8
1,218,659	+		Sama_1006	0.59	-2.8