Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0804 and Sama_0805 are separated by 109 nucleotides Sama_0805 and Sama_0806 are separated by 41 nucleotides Sama_0806 and Sama_0807 are separated by 49 nucleotides
Sama_0804: Sama_0804 - hypothetical protein (RefSeq), at 987,597 to 989,354
_0804
Sama_0805: Sama_0805 - hypothetical protein (RefSeq), at 989,464 to 990,213
_0805
Sama_0806: Sama_0806 - hypothetical protein (RefSeq), at 990,255 to 990,905
_0806
Sama_0807: Sama_0807 - alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq), at 990,955 to 991,638
_0807
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 988.483 kb on + strand, within Sama_0804 at 988.562 kb on + strand, within Sama_0804 at 988.886 kb on + strand, within Sama_0804 at 988.887 kb on - strand, within Sama_0804 at 988.911 kb on + strand, within Sama_0804 at 988.912 kb on - strand, within Sama_0804 at 989.082 kb on + strand, within Sama_0804 at 989.082 kb on + strand, within Sama_0804 at 989.082 kb on + strand, within Sama_0804 at 989.083 kb on - strand, within Sama_0804 at 989.083 kb on - strand, within Sama_0804 at 989.169 kb on + strand, within Sama_0804 at 989.231 kb on + strand at 989.231 kb on + strand at 989.273 kb on + strand at 989.273 kb on + strand at 989.273 kb on + strand at 989.273 kb on + strand at 989.273 kb on + strand at 989.274 kb on - strand at 989.274 kb on - strand at 989.276 kb on + strand at 989.276 kb on + strand at 989.276 kb on + strand at 989.285 kb on + strand at 989.285 kb on + strand at 989.286 kb on - strand at 989.286 kb on - strand at 989.325 kb on + strand at 989.326 kb on - strand at 989.326 kb on - strand at 989.327 kb on + strand at 989.328 kb on - strand at 989.328 kb on - strand at 989.401 kb on + strand at 989.401 kb on + strand at 989.449 kb on + strand at 989.490 kb on + strand at 989.492 kb on + strand at 989.492 kb on + strand at 989.492 kb on + strand at 989.492 kb on + strand at 989.492 kb on + strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.493 kb on - strand at 989.512 kb on + strand at 989.512 kb on + strand at 989.512 kb on + strand at 989.512 kb on + strand at 989.512 kb on + strand at 989.512 kb on + strand at 989.513 kb on - strand at 989.513 kb on - strand at 989.513 kb on - strand at 989.513 kb on - strand at 989.513 kb on - strand at 989.530 kb on + strand at 989.530 kb on + strand at 989.530 kb on + strand at 989.554 kb on - strand, within Sama_0805 at 989.554 kb on - strand, within Sama_0805 at 989.554 kb on - strand, within Sama_0805 at 989.584 kb on + strand, within Sama_0805 at 989.593 kb on + strand, within Sama_0805 at 989.593 kb on + strand, within Sama_0805 at 989.657 kb on + strand, within Sama_0805 at 989.669 kb on + strand, within Sama_0805 at 989.669 kb on + strand, within Sama_0805 at 989.670 kb on - strand, within Sama_0805 at 989.692 kb on + strand, within Sama_0805 at 989.693 kb on - strand, within Sama_0805 at 989.715 kb on + strand, within Sama_0805 at 989.736 kb on + strand, within Sama_0805 at 989.771 kb on + strand, within Sama_0805 at 989.771 kb on + strand, within Sama_0805 at 989.771 kb on + strand, within Sama_0805 at 989.772 kb on - strand, within Sama_0805 at 989.777 kb on + strand, within Sama_0805 at 989.777 kb on + strand, within Sama_0805 at 989.777 kb on + strand, within Sama_0805 at 989.785 kb on + strand, within Sama_0805 at 989.785 kb on + strand, within Sama_0805 at 989.785 kb on + strand, within Sama_0805 at 989.786 kb on - strand, within Sama_0805 at 989.812 kb on - strand, within Sama_0805 at 989.878 kb on + strand, within Sama_0805 at 989.878 kb on + strand, within Sama_0805 at 990.016 kb on + strand, within Sama_0805 at 990.016 kb on + strand, within Sama_0805 at 990.017 kb on - strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.058 kb on - strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.144 kb on + strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.205 kb on + strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.246 kb on - strand at 990.246 kb on - strand at 990.246 kb on - strand at 990.308 kb on + strand at 990.308 kb on + strand at 990.309 kb on - strand at 990.310 kb on + strand at 990.310 kb on + strand at 990.311 kb on - strand at 990.311 kb on - strand at 990.311 kb on - strand at 990.329 kb on + strand, within Sama_0806 at 990.329 kb on + strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.463 kb on + strand, within Sama_0806 at 990.482 kb on + strand, within Sama_0806 at 990.483 kb on - strand, within Sama_0806 at 990.525 kb on - strand, within Sama_0806 at 990.542 kb on - strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.629 kb on - strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.680 kb on + strand, within Sama_0806 at 990.681 kb on - strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.747 kb on + strand, within Sama_0806 at 990.768 kb on - strand, within Sama_0806 at 990.874 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.896 kb on + strand at 990.896 kb on + strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.924 kb on - strand at 990.945 kb on + strand at 990.946 kb on - strand at 990.957 kb on - strand at 990.957 kb on - strand at 990.994 kb on - strand at 991.034 kb on + strand, within Sama_0807 at 991.034 kb on + strand, within Sama_0807 at 991.035 kb on - strand, within Sama_0807 at 991.048 kb on - strand, within Sama_0807 at 991.059 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.154 kb on + strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 988,483 + Sama_0804 0.50 -0.8 988,562 + Sama_0804 0.55 -2.2 988,886 + Sama_0804 0.73 -0.0 988,887 - Sama_0804 0.73 +0.3 988,911 + Sama_0804 0.75 -1.0 988,912 - Sama_0804 0.75 -0.3 989,082 + Sama_0804 0.84 +3.3 989,082 + Sama_0804 0.84 -2.3 989,082 + Sama_0804 0.84 -0.5 989,083 - Sama_0804 0.85 +0.2 989,083 - Sama_0804 0.85 -2.5 989,169 + Sama_0804 0.89 +1.4 989,231 + +0.6 989,231 + +2.0 989,273 + -3.1 989,273 + -0.0 989,273 + -1.4 989,273 + -3.6 989,273 + -1.5 989,274 - +0.8 989,274 - -1.7 989,276 + -0.9 989,276 + +3.4 989,276 + +1.1 989,285 + -2.5 989,285 + +0.1 989,286 - -1.1 989,286 - +0.8 989,325 + -2.6 989,326 - -1.0 989,326 - +2.0 989,327 + +1.4 989,328 - -2.2 989,328 - -0.5 989,401 + +2.2 989,401 + -0.8 989,449 + -1.0 989,490 + +0.9 989,492 + +1.9 989,492 + -0.0 989,492 + +0.5 989,492 + -1.3 989,492 + -0.9 989,493 - -1.5 989,493 - +0.7 989,493 - +2.6 989,493 - +0.9 989,493 - +0.4 989,493 - +1.1 989,493 - -1.3 989,493 - -1.0 989,512 + -2.0 989,512 + -0.2 989,512 + +1.9 989,512 + +2.2 989,512 + -2.0 989,512 + +0.7 989,513 - +0.9 989,513 - -0.2 989,513 - +0.6 989,513 - +2.3 989,513 - +0.6 989,530 + -0.6 989,530 + +2.8 989,530 + +3.6 989,554 - Sama_0805 0.12 -0.4 989,554 - Sama_0805 0.12 -2.2 989,554 - Sama_0805 0.12 +0.7 989,584 + Sama_0805 0.16 -0.8 989,593 + Sama_0805 0.17 +1.6 989,593 + Sama_0805 0.17 -2.7 989,657 + Sama_0805 0.26 +1.1 989,669 + Sama_0805 0.27 +2.4 989,669 + Sama_0805 0.27 -1.0 989,670 - Sama_0805 0.27 -2.0 989,692 + Sama_0805 0.30 -2.3 989,693 - Sama_0805 0.31 -0.6 989,715 + Sama_0805 0.33 -1.4 989,736 + Sama_0805 0.36 +0.8 989,771 + Sama_0805 0.41 +0.2 989,771 + Sama_0805 0.41 +0.2 989,771 + Sama_0805 0.41 -0.8 989,772 - Sama_0805 0.41 +2.0 989,777 + Sama_0805 0.42 +1.2 989,777 + Sama_0805 0.42 -0.6 989,777 + Sama_0805 0.42 -2.0 989,785 + Sama_0805 0.43 +0.2 989,785 + Sama_0805 0.43 -0.1 989,785 + Sama_0805 0.43 +0.7 989,786 - Sama_0805 0.43 -0.5 989,812 - Sama_0805 0.46 +4.8 989,878 + Sama_0805 0.55 +4.7 989,878 + Sama_0805 0.55 -3.0 990,016 + Sama_0805 0.74 -1.1 990,016 + Sama_0805 0.74 -1.8 990,017 - Sama_0805 0.74 +0.3 990,057 + Sama_0805 0.79 -1.4 990,057 + Sama_0805 0.79 -1.6 990,057 + Sama_0805 0.79 -1.0 990,058 - Sama_0805 0.79 -1.0 990,089 + Sama_0805 0.83 -1.7 990,089 + Sama_0805 0.83 -1.2 990,089 + Sama_0805 0.83 -0.4 990,089 + Sama_0805 0.83 +3.6 990,089 + Sama_0805 0.83 -3.6 990,089 + Sama_0805 0.83 -2.4 990,089 + Sama_0805 0.83 -1.7 990,089 + Sama_0805 0.83 +1.5 990,089 + Sama_0805 0.83 -0.4 990,089 + Sama_0805 0.83 -0.1 990,089 + Sama_0805 0.83 +0.7 990,089 + Sama_0805 0.83 -1.0 990,089 + Sama_0805 0.83 -1.1 990,089 + Sama_0805 0.83 -1.1 990,090 - Sama_0805 0.83 -1.5 990,090 - Sama_0805 0.83 +1.2 990,090 - Sama_0805 0.83 +0.6 990,090 - Sama_0805 0.83 -0.8 990,090 - Sama_0805 0.83 -0.2 990,090 - Sama_0805 0.83 +0.7 990,090 - Sama_0805 0.83 +1.4 990,090 - Sama_0805 0.83 +0.4 990,090 - Sama_0805 0.83 -0.1 990,090 - Sama_0805 0.83 -2.0 990,093 - Sama_0805 0.84 -3.1 990,093 - Sama_0805 0.84 +0.6 990,093 - Sama_0805 0.84 -2.3 990,125 + Sama_0805 0.88 -0.5 990,125 + Sama_0805 0.88 -0.8 990,125 + Sama_0805 0.88 -1.1 990,125 + Sama_0805 0.88 -1.9 990,144 + -2.5 990,145 - +0.4 990,145 - +0.7 990,145 - -1.1 990,145 - -1.7 990,205 + -2.2 990,206 - +1.1 990,206 - +0.8 990,206 - -1.9 990,206 - -0.8 990,246 - -1.3 990,246 - +0.3 990,246 - -0.2 990,308 + +2.0 990,308 + -0.7 990,309 - -1.3 990,310 + -2.0 990,310 + -0.3 990,311 - -0.9 990,311 - -1.3 990,311 - -0.9 990,329 + Sama_0806 0.11 -0.8 990,329 + Sama_0806 0.11 -1.7 990,330 - Sama_0806 0.12 -1.1 990,330 - Sama_0806 0.12 -0.7 990,330 - Sama_0806 0.12 -1.0 990,330 - Sama_0806 0.12 +1.7 990,463 + Sama_0806 0.32 +0.1 990,482 + Sama_0806 0.35 +0.6 990,483 - Sama_0806 0.35 +0.8 990,525 - Sama_0806 0.41 -2.6 990,542 - Sama_0806 0.44 +0.9 990,581 + Sama_0806 0.50 +0.2 990,581 + Sama_0806 0.50 +0.1 990,581 + Sama_0806 0.50 +1.6 990,581 + Sama_0806 0.50 -1.5 990,581 + Sama_0806 0.50 -0.1 990,581 + Sama_0806 0.50 +1.3 990,582 - Sama_0806 0.50 -1.9 990,582 - Sama_0806 0.50 -0.4 990,582 - Sama_0806 0.50 +1.2 990,582 - Sama_0806 0.50 +1.5 990,582 - Sama_0806 0.50 +0.3 990,582 - Sama_0806 0.50 -0.1 990,582 - Sama_0806 0.50 -0.7 990,582 - Sama_0806 0.50 -2.3 990,605 + Sama_0806 0.54 -1.6 990,605 + Sama_0806 0.54 +0.2 990,605 + Sama_0806 0.54 +0.3 990,605 + Sama_0806 0.54 -1.2 990,606 - Sama_0806 0.54 +1.9 990,606 - Sama_0806 0.54 +0.4 990,606 - Sama_0806 0.54 -3.5 990,606 - Sama_0806 0.54 +0.0 990,628 + Sama_0806 0.57 -1.9 990,628 + Sama_0806 0.57 -1.0 990,628 + Sama_0806 0.57 -0.7 990,628 + Sama_0806 0.57 -1.8 990,629 - Sama_0806 0.57 -1.1 990,639 + Sama_0806 0.59 +3.0 990,639 + Sama_0806 0.59 +0.7 990,639 + Sama_0806 0.59 -2.2 990,639 + Sama_0806 0.59 -2.7 990,639 + Sama_0806 0.59 -2.0 990,639 + Sama_0806 0.59 -3.7 990,639 + Sama_0806 0.59 +0.5 990,640 - Sama_0806 0.59 +0.0 990,640 - Sama_0806 0.59 -1.0 990,640 - Sama_0806 0.59 -2.3 990,680 + Sama_0806 0.65 -0.4 990,681 - Sama_0806 0.65 -0.7 990,707 + Sama_0806 0.69 +0.2 990,707 + Sama_0806 0.69 -1.4 990,707 + Sama_0806 0.69 -0.9 990,707 + Sama_0806 0.69 +0.2 990,707 + Sama_0806 0.69 -2.8 990,708 - Sama_0806 0.70 +0.9 990,708 - Sama_0806 0.70 -0.9 990,708 - Sama_0806 0.70 -2.2 990,708 - Sama_0806 0.70 -1.3 990,747 + Sama_0806 0.76 -0.6 990,768 - Sama_0806 0.79 +0.6 990,874 + -1.8 990,890 + +0.8 990,890 + +4.8 990,890 + -1.3 990,890 + -0.4 990,890 + -1.0 990,890 + +0.6 990,890 + +0.9 990,890 + -1.4 990,891 - -0.3 990,891 - -1.3 990,891 - +1.5 990,891 - +3.4 990,891 - -1.6 990,891 - -0.0 990,891 - +0.8 990,891 - +1.8 990,891 - +3.3 990,891 - -1.8 990,891 - +1.2 990,896 + -1.0 990,896 + +0.7 990,897 - -0.3 990,897 - -1.7 990,897 - +2.1 990,919 - -1.8 990,919 - +2.2 990,919 - -2.0 990,924 - +1.1 990,945 + -0.2 990,946 - -0.1 990,957 - +0.9 990,957 - -1.0 990,994 - -2.1 991,034 + Sama_0807 0.12 -0.5 991,034 + Sama_0807 0.12 +0.1 991,035 - Sama_0807 0.12 -1.3 991,048 - Sama_0807 0.14 -1.9 991,059 + Sama_0807 0.15 -1.6 991,070 + Sama_0807 0.17 +2.8 991,070 + Sama_0807 0.17 +0.4 991,070 + Sama_0807 0.17 -0.1 991,070 + Sama_0807 0.17 -1.1 991,070 + Sama_0807 0.17 +1.0 991,070 + Sama_0807 0.17 +0.2 991,071 - Sama_0807 0.17 +0.0 991,071 - Sama_0807 0.17 +1.9 991,071 - Sama_0807 0.17 +2.9 991,071 - Sama_0807 0.17 +0.1 991,071 - Sama_0807 0.17 -1.0 991,154 + Sama_0807 0.29 +0.5 991,155 - Sama_0807 0.29 -2.4 991,155 - Sama_0807 0.29 -1.2
Or see this region's nucleotide sequence