Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0284 and Sama_0285 are separated by 80 nucleotides Sama_0285 and Sama_0286 are separated by 256 nucleotides
Sama_0284: Sama_0284 - sodium/alanine symporter (RefSeq), at 331,946 to 333,379
_0284
Sama_0285: Sama_0285 - nucleotidase (RefSeq), at 333,460 to 334,149
_0285
Sama_0286: Sama_0286 - TonB-dependent receptor (RefSeq), at 334,406 to 337,336
_0286
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 332.489 kb on + strand, within Sama_0284 at 332.489 kb on + strand, within Sama_0284 at 332.490 kb on - strand, within Sama_0284 at 332.500 kb on - strand, within Sama_0284 at 332.647 kb on + strand, within Sama_0284 at 332.648 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.681 kb on + strand, within Sama_0284 at 332.681 kb on + strand, within Sama_0284 at 332.682 kb on - strand, within Sama_0284 at 332.691 kb on + strand, within Sama_0284 at 332.691 kb on + strand, within Sama_0284 at 332.730 kb on + strand, within Sama_0284 at 332.829 kb on + strand, within Sama_0284 at 332.830 kb on - strand, within Sama_0284 at 332.830 kb on - strand, within Sama_0284 at 332.831 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.956 kb on + strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 333.052 kb on - strand, within Sama_0284 at 333.052 kb on - strand, within Sama_0284 at 333.064 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.105 kb on - strand, within Sama_0284 at 333.105 kb on - strand, within Sama_0284 at 333.155 kb on + strand, within Sama_0284 at 333.155 kb on + strand, within Sama_0284 at 333.156 kb on - strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.162 kb on - strand, within Sama_0284 at 333.162 kb on - strand, within Sama_0284 at 333.167 kb on + strand, within Sama_0284 at 333.167 kb on + strand, within Sama_0284 at 333.168 kb on - strand, within Sama_0284 at 333.184 kb on - strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.237 kb on - strand at 333.273 kb on + strand at 333.274 kb on - strand at 333.311 kb on + strand at 333.311 kb on + strand at 333.312 kb on - strand at 333.312 kb on - strand at 333.380 kb on + strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.384 kb on - strand at 333.384 kb on - strand at 333.384 kb on - strand at 333.419 kb on + strand at 333.420 kb on - strand at 333.420 kb on - strand at 333.442 kb on + strand at 333.442 kb on + strand at 333.446 kb on + strand at 333.446 kb on + strand at 333.446 kb on + strand at 333.447 kb on - strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.497 kb on + strand at 333.497 kb on + strand at 333.497 kb on + strand at 333.498 kb on - strand at 333.498 kb on - strand at 333.498 kb on - strand at 333.601 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.062 kb on + strand, within Sama_0285 at 334.063 kb on - strand, within Sama_0285 at 334.113 kb on + strand at 334.113 kb on + strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.139 kb on + strand at 334.207 kb on + strand at 334.256 kb on - strand at 334.276 kb on + strand at 334.282 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.315 kb on - strand at 334.567 kb on + strand at 334.567 kb on + strand at 334.618 kb on + strand at 334.618 kb on + strand at 334.619 kb on - strand at 334.750 kb on + strand, within Sama_0286 at 334.786 kb on + strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.871 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.905 kb on - strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.048 kb on + strand, within Sama_0286 at 335.049 kb on - strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 332,489 + Sama_0284 0.38 -0.4 332,489 + Sama_0284 0.38 +3.7 332,490 - Sama_0284 0.38 +4.1 332,500 - Sama_0284 0.39 +1.9 332,647 + Sama_0284 0.49 +4.2 332,648 - Sama_0284 0.49 -2.7 332,664 - Sama_0284 0.50 -0.1 332,664 - Sama_0284 0.50 +0.0 332,664 - Sama_0284 0.50 -2.1 332,681 + Sama_0284 0.51 -1.2 332,681 + Sama_0284 0.51 -2.2 332,682 - Sama_0284 0.51 -0.3 332,691 + Sama_0284 0.52 +3.0 332,691 + Sama_0284 0.52 -1.8 332,730 + Sama_0284 0.55 -1.3 332,829 + Sama_0284 0.62 -2.5 332,830 - Sama_0284 0.62 -0.7 332,830 - Sama_0284 0.62 -1.9 332,831 - Sama_0284 0.62 +0.4 332,848 - Sama_0284 0.63 +0.3 332,848 - Sama_0284 0.63 -1.6 332,848 - Sama_0284 0.63 +2.6 332,950 + Sama_0284 0.70 -1.0 332,950 + Sama_0284 0.70 -1.7 332,950 + Sama_0284 0.70 -1.3 332,951 - Sama_0284 0.70 -3.1 332,951 - Sama_0284 0.70 -1.9 332,951 - Sama_0284 0.70 -0.4 332,956 + Sama_0284 0.70 -0.3 332,957 - Sama_0284 0.71 -0.6 332,957 - Sama_0284 0.71 +4.7 332,957 - Sama_0284 0.71 +2.5 333,052 - Sama_0284 0.77 -1.6 333,052 - Sama_0284 0.77 -2.8 333,064 + Sama_0284 0.78 -2.4 333,104 + Sama_0284 0.81 -1.6 333,104 + Sama_0284 0.81 +0.2 333,104 + Sama_0284 0.81 -0.7 333,105 - Sama_0284 0.81 +0.8 333,105 - Sama_0284 0.81 -2.0 333,155 + Sama_0284 0.84 -1.9 333,155 + Sama_0284 0.84 -0.1 333,156 - Sama_0284 0.84 +3.0 333,161 + Sama_0284 0.85 +1.7 333,161 + Sama_0284 0.85 +3.8 333,161 + Sama_0284 0.85 +2.0 333,161 + Sama_0284 0.85 +2.0 333,161 + Sama_0284 0.85 -0.3 333,162 - Sama_0284 0.85 +0.9 333,162 - Sama_0284 0.85 -1.4 333,167 + Sama_0284 0.85 +2.2 333,167 + Sama_0284 0.85 -0.6 333,168 - Sama_0284 0.85 +2.9 333,184 - Sama_0284 0.86 +2.5 333,213 + Sama_0284 0.88 -0.9 333,213 + Sama_0284 0.88 +1.0 333,213 + Sama_0284 0.88 -0.7 333,213 + Sama_0284 0.88 +0.6 333,213 + Sama_0284 0.88 -0.6 333,213 + Sama_0284 0.88 -0.5 333,213 + Sama_0284 0.88 +2.2 333,213 + Sama_0284 0.88 -0.2 333,214 - Sama_0284 0.88 -2.5 333,214 - Sama_0284 0.88 +2.3 333,214 - Sama_0284 0.88 -1.4 333,214 - Sama_0284 0.88 -0.7 333,214 - Sama_0284 0.88 +0.4 333,214 - Sama_0284 0.88 +1.0 333,237 - +0.1 333,273 + -4.1 333,274 - +0.0 333,311 + +3.7 333,311 + +2.5 333,312 - +0.0 333,312 - +2.9 333,380 + +0.2 333,381 - +1.2 333,381 - +2.9 333,381 - +1.7 333,381 - -0.7 333,381 - -2.2 333,384 - -0.1 333,384 - +3.0 333,384 - -2.2 333,419 + +0.3 333,420 - -0.4 333,420 - -0.0 333,442 + -0.5 333,442 + -0.9 333,446 + -0.3 333,446 + -1.6 333,446 + -0.2 333,447 - -0.3 333,459 + -0.4 333,459 + -1.3 333,459 + -0.5 333,459 + -0.5 333,459 + +0.4 333,460 - +1.2 333,460 - -2.3 333,460 - +1.3 333,460 - -1.6 333,460 - +0.1 333,460 - -0.1 333,497 + +1.2 333,497 + -1.4 333,497 + -1.7 333,498 - -0.6 333,498 - -1.5 333,498 - -0.1 333,601 + Sama_0285 0.20 -1.1 334,060 + Sama_0285 0.87 +0.2 334,060 + Sama_0285 0.87 +0.3 334,060 + Sama_0285 0.87 -1.4 334,060 + Sama_0285 0.87 -1.4 334,060 + Sama_0285 0.87 -0.3 334,060 + Sama_0285 0.87 -1.4 334,061 - Sama_0285 0.87 -0.6 334,061 - Sama_0285 0.87 -0.8 334,061 - Sama_0285 0.87 +0.1 334,061 - Sama_0285 0.87 +0.4 334,061 - Sama_0285 0.87 -1.9 334,062 + Sama_0285 0.87 -1.0 334,063 - Sama_0285 0.87 -0.3 334,113 + +3.4 334,113 + -2.3 334,114 - -0.9 334,114 - +2.4 334,114 - +3.8 334,114 - -1.2 334,139 + +0.1 334,207 + +0.8 334,256 - +2.1 334,276 + -0.5 334,282 + -2.0 334,311 + +1.4 334,311 + +2.6 334,311 + +2.0 334,311 + -0.2 334,311 + +0.5 334,311 + +0.4 334,311 + +3.0 334,311 + -1.3 334,312 - -1.1 334,312 - +1.4 334,312 - -2.1 334,312 - +0.2 334,312 - -2.1 334,312 - -0.7 334,312 - +1.5 334,312 - -2.2 334,312 - -2.2 334,315 - -1.3 334,567 + +1.1 334,567 + +0.2 334,618 + +0.2 334,618 + -1.2 334,619 - +2.2 334,750 + Sama_0286 0.12 +0.5 334,786 + Sama_0286 0.13 -0.7 334,787 - Sama_0286 0.13 -1.9 334,787 - Sama_0286 0.13 +5.2 334,787 - Sama_0286 0.13 -0.8 334,871 + Sama_0286 0.16 -1.8 334,904 + Sama_0286 0.17 -1.6 334,904 + Sama_0286 0.17 +1.1 334,904 + Sama_0286 0.17 +0.0 334,904 + Sama_0286 0.17 +1.5 334,904 + Sama_0286 0.17 -0.4 334,904 + Sama_0286 0.17 -2.8 334,904 + Sama_0286 0.17 -0.9 334,905 - Sama_0286 0.17 +1.9 334,996 + Sama_0286 0.20 -1.4 334,996 + Sama_0286 0.20 -1.6 334,996 + Sama_0286 0.20 +1.0 334,996 + Sama_0286 0.20 +0.6 334,996 + Sama_0286 0.20 +0.9 334,996 + Sama_0286 0.20 -2.7 334,996 + Sama_0286 0.20 -0.1 334,996 + Sama_0286 0.20 -1.2 334,996 + Sama_0286 0.20 -2.1 334,996 + Sama_0286 0.20 -1.4 334,996 + Sama_0286 0.20 -0.3 334,996 + Sama_0286 0.20 -2.8 334,996 + Sama_0286 0.20 -1.1 334,996 + Sama_0286 0.20 -1.3 334,996 + Sama_0286 0.20 -1.1 334,996 + Sama_0286 0.20 -1.7 334,996 + Sama_0286 0.20 +1.1 334,996 + Sama_0286 0.20 +0.8 334,996 + Sama_0286 0.20 -0.5 334,996 + Sama_0286 0.20 +1.5 334,997 - Sama_0286 0.20 +0.7 334,997 - Sama_0286 0.20 -1.3 334,997 - Sama_0286 0.20 +2.1 334,997 - Sama_0286 0.20 +0.3 334,997 - Sama_0286 0.20 +1.7 334,997 - Sama_0286 0.20 -1.1 334,997 - Sama_0286 0.20 -2.5 334,997 - Sama_0286 0.20 -0.0 335,024 + Sama_0286 0.21 -0.3 335,024 + Sama_0286 0.21 -2.1 335,024 + Sama_0286 0.21 +2.7 335,024 + Sama_0286 0.21 +0.1 335,024 + Sama_0286 0.21 -2.8 335,024 + Sama_0286 0.21 +2.7 335,025 - Sama_0286 0.21 -0.1 335,025 - Sama_0286 0.21 -1.8 335,025 - Sama_0286 0.21 +0.9 335,025 - Sama_0286 0.21 -1.7 335,025 - Sama_0286 0.21 +1.5 335,025 - Sama_0286 0.21 -2.6 335,025 - Sama_0286 0.21 -0.7 335,048 + Sama_0286 0.22 +0.2 335,049 - Sama_0286 0.22 +2.5 335,132 + Sama_0286 0.25 +1.5 335,132 + Sama_0286 0.25 -0.8 335,132 + Sama_0286 0.25 -1.0
Or see this region's nucleotide sequence