Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4161

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4160 and Dshi_4161 are separated by 202 nucleotidesDshi_4161 and Dshi_4162 are separated by 10 nucleotides Dshi_4160: Dshi_4160 - light-dependent protochlorophyllide reductase (RefSeq), at 7,713 to 8,699 _4160 Dshi_4161: Dshi_4161 - MltA-interacting MipA family protein (RefSeq), at 8,902 to 9,714 _4161 Dshi_4162: Dshi_4162 - glycosyl transferase group 1 (RefSeq), at 9,725 to 10,768 _4162 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1at 8.007 kb on + strand, within Dshi_4160at 8.035 kb on + strand, within Dshi_4160at 8.095 kb on - strand, within Dshi_4160at 8.257 kb on + strand, within Dshi_4160at 8.575 kb on - strand, within Dshi_4160at 8.580 kb on - strand, within Dshi_4160at 8.590 kb on - strand, within Dshi_4160at 8.656 kb on - strandat 8.656 kb on - strandat 8.656 kb on - strandat 8.695 kb on - strandat 8.709 kb on + strandat 9.392 kb on + strand, within Dshi_4161at 9.460 kb on - strand, within Dshi_4161at 10.045 kb on - strand, within Dshi_4162at 10.362 kb on + strand, within Dshi_4162at 10.371 kb on - strand, within Dshi_4162

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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8,007 + Dshi_4160 0.30 +0.6
8,035 + Dshi_4160 0.33 +0.2
8,095 - Dshi_4160 0.39 -0.6
8,257 + Dshi_4160 0.55 -0.3
8,575 - Dshi_4160 0.87 -0.1
8,580 - Dshi_4160 0.88 +0.3
8,590 - Dshi_4160 0.89 +1.0
8,656 - +0.1
8,656 - -0.1
8,656 - +0.5
8,695 - -0.4
8,709 + +1.1
9,392 + Dshi_4161 0.60 -0.0
9,460 - Dshi_4161 0.69 -0.5
10,045 - Dshi_4162 0.31 +0.4
10,362 + Dshi_4162 0.61 -1.0
10,371 - Dshi_4162 0.62 +1.0

Or see this region's nucleotide sequence