Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3875

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3873 and Dshi_3874 are separated by 55 nucleotidesDshi_3874 and Dshi_3875 overlap by 4 nucleotidesDshi_3875 and Dshi_3876 are separated by 138 nucleotides Dshi_3873: Dshi_3873 - hypothetical protein (RefSeq), at 94,097 to 94,681 _3873 Dshi_3874: Dshi_3874 - ATP-binding protein (RefSeq), at 94,737 to 95,561 _3874 Dshi_3875: Dshi_3875 - Integrase catalytic region (RefSeq), at 95,558 to 97,051 _3875 Dshi_3876: Dshi_3876 - Resolvase domain (RefSeq), at 97,190 to 97,789 _3876 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -1 0 1at 94.563 kb on - strand, within Dshi_3873at 94.581 kb on - strand, within Dshi_3873at 94.581 kb on - strand, within Dshi_3873at 94.617 kb on - strand, within Dshi_3873at 94.619 kb on + strand, within Dshi_3873at 94.646 kb on + strandat 94.646 kb on - strandat 94.649 kb on - strandat 94.649 kb on - strandat 94.651 kb on + strandat 94.652 kb on + strandat 94.653 kb on + strandat 94.656 kb on - strandat 94.658 kb on + strandat 94.658 kb on + strandat 94.659 kb on - strandat 94.659 kb on - strandat 94.661 kb on - strandat 94.661 kb on - strandat 94.661 kb on - strandat 94.666 kb on - strandat 94.666 kb on - strandat 94.666 kb on - strandat 94.671 kb on - strandat 94.689 kb on - strandat 94.689 kb on - strandat 94.689 kb on - strandat 94.689 kb on - strandat 94.692 kb on + strandat 94.706 kb on - strandat 94.706 kb on - strandat 94.706 kb on - strandat 94.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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94,563 - Dshi_3873 0.80 -0.1
94,581 - Dshi_3873 0.83 -0.7
94,581 - Dshi_3873 0.83 +0.4
94,617 - Dshi_3873 0.89 +0.1
94,619 + Dshi_3873 0.89 -0.3
94,646 + -0.0
94,646 - +0.3
94,649 - +0.0
94,649 - -1.1
94,651 + -0.2
94,652 + +0.0
94,653 + -0.7
94,656 - +0.2
94,658 + -0.8
94,658 + +0.0
94,659 - -0.1
94,659 - +0.5
94,661 - -0.4
94,661 - -0.2
94,661 - +0.4
94,666 - -0.3
94,666 - -0.8
94,666 - +0.1
94,671 - -0.4
94,689 - -1.3
94,689 - +0.7
94,689 - -0.5
94,689 - -0.6
94,692 + -0.9
94,706 - -0.1
94,706 - +0.1
94,706 - -0.2
94,708 - +0.6

Or see this region's nucleotide sequence