Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2730

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2728 and Dshi_2729 are separated by 78 nucleotidesDshi_2729 and Dshi_2730 are separated by 42 nucleotidesDshi_2730 and Dshi_2731 overlap by 1 nucleotidesDshi_2731 and Dshi_2732 are separated by 71 nucleotidesDshi_2732 and Dshi_2733 are separated by 112 nucleotides Dshi_2728: Dshi_2728 - phosphoribosylamine--glycine ligase (RefSeq), at 2,890,448 to 2,891,710 _2728 Dshi_2729: Dshi_2729 - Ion transport 2 domain protein (RefSeq), at 2,891,789 to 2,892,655 _2729 Dshi_2730: Dshi_2730 - FG-GAP repeat domain protein (RefSeq), at 2,892,698 to 2,893,456 _2730 Dshi_2731: Dshi_2731 - ferredoxin (RefSeq), at 2,893,456 to 2,893,779 _2731 Dshi_2732: Dshi_2732 - nucleic acid binding OB-fold tRNA/helicase-type (RefSeq), at 2,893,851 to 2,894,264 _2732 Dshi_2733: Dshi_2733 - protease Do (RefSeq), at 2,894,377 to 2,895,882 _2733 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -1 0 1at 2891.713 kb on - strandat 2891.753 kb on - strandat 2891.794 kb on + strandat 2891.794 kb on + strandat 2891.807 kb on - strandat 2891.828 kb on + strandat 2891.914 kb on - strand, within Dshi_2729at 2891.934 kb on - strand, within Dshi_2729at 2891.955 kb on + strand, within Dshi_2729at 2891.955 kb on + strand, within Dshi_2729at 2891.963 kb on - strand, within Dshi_2729at 2891.963 kb on - strand, within Dshi_2729at 2891.991 kb on - strand, within Dshi_2729at 2892.302 kb on + strand, within Dshi_2729at 2892.713 kb on + strandat 2892.795 kb on - strand, within Dshi_2730at 2892.795 kb on - strand, within Dshi_2730at 2892.861 kb on - strand, within Dshi_2730at 2893.016 kb on - strand, within Dshi_2730at 2893.019 kb on - strand, within Dshi_2730at 2893.031 kb on + strand, within Dshi_2730at 2893.145 kb on + strand, within Dshi_2730at 2893.248 kb on - strand, within Dshi_2730at 2893.955 kb on - strand, within Dshi_2732at 2894.150 kb on + strand, within Dshi_2732at 2894.253 kb on + strandat 2894.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,891,713 - -0.4
2,891,753 - +0.5
2,891,794 + -0.1
2,891,794 + +0.6
2,891,807 - +0.3
2,891,828 + -0.5
2,891,914 - Dshi_2729 0.14 -0.7
2,891,934 - Dshi_2729 0.17 -0.1
2,891,955 + Dshi_2729 0.19 -0.9
2,891,955 + Dshi_2729 0.19 +0.3
2,891,963 - Dshi_2729 0.20 -0.6
2,891,963 - Dshi_2729 0.20 -0.3
2,891,991 - Dshi_2729 0.23 -0.2
2,892,302 + Dshi_2729 0.59 -0.9
2,892,713 + +0.6
2,892,795 - Dshi_2730 0.13 -0.2
2,892,795 - Dshi_2730 0.13 -0.3
2,892,861 - Dshi_2730 0.21 +0.2
2,893,016 - Dshi_2730 0.42 +0.6
2,893,019 - Dshi_2730 0.42 -0.3
2,893,031 + Dshi_2730 0.44 +0.1
2,893,145 + Dshi_2730 0.59 -0.8
2,893,248 - Dshi_2730 0.72 -0.2
2,893,955 - Dshi_2732 0.25 -0.1
2,894,150 + Dshi_2732 0.72 -0.7
2,894,253 + -0.1
2,894,297 - +0.1

Or see this region's nucleotide sequence