Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2252

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2251 and Dshi_2252 are separated by 138 nucleotidesDshi_2252 and Dshi_2253 are separated by 186 nucleotides Dshi_2251: Dshi_2251 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 2,371,565 to 2,372,680 _2251 Dshi_2252: Dshi_2252 - riboflavin synthase, alpha subunit (RefSeq), at 2,372,819 to 2,373,421 _2252 Dshi_2253: Dshi_2253 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,373,608 to 2,374,894 _2253 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -3 -2 -1 0 1at 2372.769 kb on - strandat 2373.422 kb on + strandat 2373.429 kb on - strandat 2373.429 kb on - strandat 2373.447 kb on - strandat 2373.474 kb on + strandat 2373.485 kb on + strandat 2373.493 kb on - strandat 2373.545 kb on - strandat 2373.604 kb on + strandat 2373.606 kb on - strandat 2373.612 kb on - strandat 2373.683 kb on + strandat 2373.721 kb on + strandat 2373.750 kb on - strand, within Dshi_2253at 2373.752 kb on + strand, within Dshi_2253at 2373.805 kb on - strand, within Dshi_2253at 2373.874 kb on + strand, within Dshi_2253at 2373.891 kb on + strand, within Dshi_2253at 2373.945 kb on + strand, within Dshi_2253at 2373.953 kb on - strand, within Dshi_2253at 2373.953 kb on - strand, within Dshi_2253at 2373.953 kb on - strand, within Dshi_2253at 2373.957 kb on + strand, within Dshi_2253at 2373.957 kb on + strand, within Dshi_2253at 2373.965 kb on - strand, within Dshi_2253at 2373.965 kb on - strand, within Dshi_2253at 2373.985 kb on + strand, within Dshi_2253at 2373.994 kb on + strand, within Dshi_2253at 2374.058 kb on + strand, within Dshi_2253at 2374.158 kb on - strand, within Dshi_2253at 2374.159 kb on + strand, within Dshi_2253at 2374.205 kb on - strand, within Dshi_2253at 2374.225 kb on + strand, within Dshi_2253at 2374.326 kb on + strand, within Dshi_2253

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,372,769 - -1.0
2,373,422 + -0.5
2,373,429 - -3.0
2,373,429 - -1.5
2,373,447 - -2.0
2,373,474 + -2.7
2,373,485 + -0.1
2,373,493 - +0.1
2,373,545 - -0.2
2,373,604 + -0.1
2,373,606 - +0.5
2,373,612 - -0.2
2,373,683 + -0.7
2,373,721 + -0.5
2,373,750 - Dshi_2253 0.11 -0.1
2,373,752 + Dshi_2253 0.11 -1.3
2,373,805 - Dshi_2253 0.15 -0.6
2,373,874 + Dshi_2253 0.21 +0.3
2,373,891 + Dshi_2253 0.22 +0.0
2,373,945 + Dshi_2253 0.26 +0.3
2,373,953 - Dshi_2253 0.27 -0.4
2,373,953 - Dshi_2253 0.27 +0.6
2,373,953 - Dshi_2253 0.27 +1.0
2,373,957 + Dshi_2253 0.27 +0.3
2,373,957 + Dshi_2253 0.27 -0.2
2,373,965 - Dshi_2253 0.28 +0.0
2,373,965 - Dshi_2253 0.28 -1.1
2,373,985 + Dshi_2253 0.29 +0.5
2,373,994 + Dshi_2253 0.30 +0.1
2,374,058 + Dshi_2253 0.35 -0.1
2,374,158 - Dshi_2253 0.43 +0.5
2,374,159 + Dshi_2253 0.43 -0.3
2,374,205 - Dshi_2253 0.46 -1.4
2,374,225 + Dshi_2253 0.48 -0.3
2,374,326 + Dshi_2253 0.56 -0.7

Or see this region's nucleotide sequence