Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2193

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2192 and Dshi_2193 are separated by 28 nucleotidesDshi_2193 and Dshi_2194 are separated by 160 nucleotidesDshi_2194 and Dshi_2195 are separated by 269 nucleotides Dshi_2192: Dshi_2192 - excinuclease ABC, B subunit (RefSeq), at 2,319,332 to 2,321,509 _2192 Dshi_2193: Dshi_2193 - hypothetical protein (RefSeq), at 2,321,538 to 2,321,693 _2193 Dshi_2194: Dshi_2194 - hypothetical protein (RefSeq), at 2,321,854 to 2,322,237 _2194 Dshi_2195: Dshi_2195 - Entericidin EcnAB (RefSeq), at 2,322,507 to 2,322,644 _2195 Position (kb) 2321 2322Strain fitness (log2 ratio) -2 -1 0 1at 2320.583 kb on - strand, within Dshi_2192at 2320.741 kb on + strand, within Dshi_2192at 2320.796 kb on - strand, within Dshi_2192at 2320.806 kb on + strand, within Dshi_2192at 2320.820 kb on - strand, within Dshi_2192at 2320.844 kb on - strand, within Dshi_2192at 2320.854 kb on - strand, within Dshi_2192at 2320.891 kb on + strand, within Dshi_2192at 2320.896 kb on + strand, within Dshi_2192at 2320.904 kb on - strand, within Dshi_2192at 2320.916 kb on + strand, within Dshi_2192at 2320.924 kb on - strand, within Dshi_2192at 2320.970 kb on + strand, within Dshi_2192at 2321.132 kb on + strand, within Dshi_2192at 2321.187 kb on + strand, within Dshi_2192at 2321.364 kb on - strandat 2321.442 kb on - strandat 2321.715 kb on + strandat 2321.736 kb on + strandat 2321.758 kb on + strandat 2321.868 kb on + strandat 2321.936 kb on + strand, within Dshi_2194at 2321.936 kb on + strand, within Dshi_2194at 2321.954 kb on - strand, within Dshi_2194at 2321.959 kb on - strand, within Dshi_2194at 2322.065 kb on + strand, within Dshi_2194at 2322.197 kb on + strand, within Dshi_2194at 2322.197 kb on + strand, within Dshi_2194at 2322.231 kb on + strandat 2322.236 kb on + strandat 2322.239 kb on - strandat 2322.257 kb on - strandat 2322.267 kb on + strandat 2322.277 kb on + strandat 2322.301 kb on + strandat 2322.301 kb on + strandat 2322.309 kb on - strandat 2322.390 kb on + strandat 2322.429 kb on - strandat 2322.458 kb on + strandat 2322.494 kb on - strandat 2322.566 kb on - strand, within Dshi_2195at 2322.635 kb on - strandat 2322.658 kb on - strandat 2322.670 kb on - strandat 2322.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,320,583 - Dshi_2192 0.57 +0.5
2,320,741 + Dshi_2192 0.65 +0.2
2,320,796 - Dshi_2192 0.67 +0.1
2,320,806 + Dshi_2192 0.68 -1.5
2,320,820 - Dshi_2192 0.68 -1.9
2,320,844 - Dshi_2192 0.69 -0.0
2,320,854 - Dshi_2192 0.70 +0.7
2,320,891 + Dshi_2192 0.72 -0.2
2,320,896 + Dshi_2192 0.72 -0.0
2,320,904 - Dshi_2192 0.72 +0.5
2,320,916 + Dshi_2192 0.73 +0.4
2,320,924 - Dshi_2192 0.73 -0.9
2,320,970 + Dshi_2192 0.75 +1.1
2,321,132 + Dshi_2192 0.83 +0.8
2,321,187 + Dshi_2192 0.85 -1.6
2,321,364 - -0.5
2,321,442 - -0.2
2,321,715 + -0.9
2,321,736 + -1.4
2,321,758 + +0.3
2,321,868 + +0.0
2,321,936 + Dshi_2194 0.21 +0.2
2,321,936 + Dshi_2194 0.21 -1.1
2,321,954 - Dshi_2194 0.26 +0.1
2,321,959 - Dshi_2194 0.27 +0.2
2,322,065 + Dshi_2194 0.55 -0.8
2,322,197 + Dshi_2194 0.89 -0.8
2,322,197 + Dshi_2194 0.89 -0.9
2,322,231 + -1.9
2,322,236 + +1.0
2,322,239 - +1.0
2,322,257 - -0.4
2,322,267 + -0.0
2,322,277 + -0.6
2,322,301 + +0.5
2,322,301 + +0.3
2,322,309 - -0.1
2,322,390 + -1.4
2,322,429 - -0.5
2,322,458 + +0.2
2,322,494 - -0.2
2,322,566 - Dshi_2195 0.43 -0.7
2,322,635 - +0.0
2,322,658 - +1.0
2,322,670 - -0.7
2,322,684 - +0.9

Or see this region's nucleotide sequence