Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1739

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1738 and Dshi_1739 are separated by 162 nucleotidesDshi_1739 and Dshi_1740 are separated by 242 nucleotides Dshi_1738: Dshi_1738 - transketolase (RefSeq), at 1,803,674 to 1,805,647 _1738 Dshi_1739: Dshi_1739 - protein of unknown function DUF808 (RefSeq), at 1,805,810 to 1,806,757 _1739 Dshi_1740: Dshi_1740 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,807,000 to 1,808,001 _1740 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1805.931 kb on + strand, within Dshi_1739at 1806.009 kb on - strand, within Dshi_1739at 1806.345 kb on + strand, within Dshi_1739at 1806.716 kb on - strandat 1806.916 kb on + strandat 1807.043 kb on + strandat 1807.267 kb on - strand, within Dshi_1740at 1807.576 kb on + strand, within Dshi_1740at 1807.595 kb on - strand, within Dshi_1740at 1807.697 kb on + strand, within Dshi_1740at 1807.731 kb on - strand, within Dshi_1740

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,805,931 + Dshi_1739 0.13 +0.1
1,806,009 - Dshi_1739 0.21 -0.4
1,806,345 + Dshi_1739 0.56 -0.6
1,806,716 - -0.1
1,806,916 + -1.6
1,807,043 + -3.5
1,807,267 - Dshi_1740 0.27 -4.6
1,807,576 + Dshi_1740 0.57 -4.5
1,807,595 - Dshi_1740 0.59 -3.3
1,807,697 + Dshi_1740 0.70 -3.9
1,807,731 - Dshi_1740 0.73 -0.9

Or see this region's nucleotide sequence