Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0823

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0821 and Dshi_0822 are separated by 197 nucleotidesDshi_0822 and Dshi_0823 are separated by 4 nucleotidesDshi_0823 and Dshi_0824 overlap by 4 nucleotides Dshi_0821: Dshi_0821 - Glycine hydroxymethyltransferase (RefSeq), at 825,519 to 826,814 _0821 Dshi_0822: Dshi_0822 - NAD(+) kinase (RefSeq), at 827,012 to 827,779 _0822 Dshi_0823: Dshi_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 827,784 to 829,175 _0823 Dshi_0824: Dshi_0824 - histidine kinase (RefSeq), at 829,172 to 830,701 _0824 Position (kb) 827 828 829 830Strain fitness (log2 ratio) -2 -1 0 1at 826.846 kb on - strandat 826.847 kb on + strandat 827.868 kb on - strandat 827.995 kb on - strand, within Dshi_0823at 828.010 kb on + strand, within Dshi_0823at 828.257 kb on + strand, within Dshi_0823at 828.288 kb on - strand, within Dshi_0823at 828.432 kb on - strand, within Dshi_0823at 828.432 kb on - strand, within Dshi_0823at 828.578 kb on + strand, within Dshi_0823at 828.607 kb on - strand, within Dshi_0823at 828.607 kb on - strand, within Dshi_0823at 828.621 kb on + strand, within Dshi_0823at 828.638 kb on - strand, within Dshi_0823at 828.687 kb on + strand, within Dshi_0823at 828.687 kb on - strand, within Dshi_0823at 828.694 kb on + strand, within Dshi_0823at 828.697 kb on - strand, within Dshi_0823at 828.790 kb on - strand, within Dshi_0823at 828.831 kb on - strand, within Dshi_0823at 828.936 kb on - strand, within Dshi_0823at 828.938 kb on + strand, within Dshi_0823at 828.983 kb on + strand, within Dshi_0823at 829.070 kb on - strandat 829.088 kb on + strandat 829.179 kb on + strandat 829.281 kb on - strandat 829.357 kb on + strand, within Dshi_0824at 829.436 kb on - strand, within Dshi_0824at 829.598 kb on + strand, within Dshi_0824at 829.618 kb on + strand, within Dshi_0824at 829.638 kb on + strand, within Dshi_0824at 829.719 kb on - strand, within Dshi_0824at 829.808 kb on + strand, within Dshi_0824at 829.824 kb on - strand, within Dshi_0824at 829.921 kb on + strand, within Dshi_0824at 829.939 kb on + strand, within Dshi_0824at 829.939 kb on + strand, within Dshi_0824at 829.952 kb on + strand, within Dshi_0824at 829.960 kb on - strand, within Dshi_0824at 829.960 kb on - strand, within Dshi_0824at 829.970 kb on - strand, within Dshi_0824at 830.026 kb on - strand, within Dshi_0824

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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826,846 - +0.2
826,847 + -0.1
827,868 - -1.7
827,995 - Dshi_0823 0.15 -0.8
828,010 + Dshi_0823 0.16 -0.1
828,257 + Dshi_0823 0.34 +0.9
828,288 - Dshi_0823 0.36 +0.3
828,432 - Dshi_0823 0.47 -0.1
828,432 - Dshi_0823 0.47 -0.8
828,578 + Dshi_0823 0.57 -0.2
828,607 - Dshi_0823 0.59 -2.4
828,607 - Dshi_0823 0.59 -0.7
828,621 + Dshi_0823 0.60 -1.8
828,638 - Dshi_0823 0.61 +0.1
828,687 + Dshi_0823 0.65 -0.1
828,687 - Dshi_0823 0.65 -0.9
828,694 + Dshi_0823 0.65 -0.3
828,697 - Dshi_0823 0.66 -1.3
828,790 - Dshi_0823 0.72 -2.5
828,831 - Dshi_0823 0.75 -1.5
828,936 - Dshi_0823 0.83 -0.5
828,938 + Dshi_0823 0.83 -0.5
828,983 + Dshi_0823 0.86 -1.4
829,070 - +0.7
829,088 + -0.6
829,179 + +0.5
829,281 - +0.9
829,357 + Dshi_0824 0.12 +0.7
829,436 - Dshi_0824 0.17 +1.1
829,598 + Dshi_0824 0.28 +0.6
829,618 + Dshi_0824 0.29 -1.1
829,638 + Dshi_0824 0.30 +0.2
829,719 - Dshi_0824 0.36 -2.1
829,808 + Dshi_0824 0.42 +0.3
829,824 - Dshi_0824 0.43 -0.5
829,921 + Dshi_0824 0.49 +0.1
829,939 + Dshi_0824 0.50 +1.3
829,939 + Dshi_0824 0.50 -0.9
829,952 + Dshi_0824 0.51 -0.5
829,960 - Dshi_0824 0.52 -1.0
829,960 - Dshi_0824 0.52 -1.3
829,970 - Dshi_0824 0.52 +1.0
830,026 - Dshi_0824 0.56 -0.0

Or see this region's nucleotide sequence