Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metR and metE are separated by 199 nucleotides metE and SO0819 are separated by 135 nucleotides
SO0817: metR - transcriptional activator protein MetR (NCBI ptt file), at 830,162 to 831,067
metR
SO0818: metE - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (NCBI ptt file), at 831,267 to 833,549
metE
SO0819: SO0819 - ISSod11, transposase (NCBI ptt file), at 833,685 to 834,641
SO0819
Position (kb) 831
832
833
834 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 830.273 kb on + strand, within metR at 830.355 kb on - strand, within metR at 830.481 kb on + strand, within metR at 830.600 kb on - strand, within metR at 830.620 kb on + strand, within metR at 830.628 kb on - strand, within metR at 830.662 kb on + strand, within metR at 830.700 kb on + strand, within metR at 830.706 kb on + strand, within metR at 830.743 kb on + strand, within metR at 830.789 kb on - strand, within metR at 830.799 kb on - strand, within metR at 830.835 kb on + strand, within metR at 830.850 kb on - strand, within metR at 830.867 kb on + strand, within metR at 830.902 kb on - strand, within metR at 830.993 kb on + strand at 831.307 kb on + strand at 831.307 kb on + strand at 831.358 kb on + strand at 831.366 kb on + strand at 831.562 kb on + strand, within metE at 831.617 kb on - strand, within metE at 831.645 kb on - strand, within metE at 831.673 kb on + strand, within metE at 831.716 kb on + strand, within metE at 831.740 kb on + strand, within metE at 831.757 kb on + strand, within metE at 831.972 kb on + strand, within metE at 831.997 kb on + strand, within metE at 832.065 kb on + strand, within metE at 832.066 kb on + strand, within metE at 832.139 kb on - strand, within metE at 832.139 kb on - strand, within metE at 832.146 kb on - strand, within metE at 832.202 kb on + strand, within metE at 832.256 kb on + strand, within metE at 832.264 kb on - strand, within metE at 832.286 kb on - strand, within metE at 832.373 kb on + strand, within metE at 832.381 kb on - strand, within metE at 832.401 kb on + strand, within metE at 832.481 kb on - strand, within metE at 832.481 kb on - strand, within metE at 832.535 kb on - strand, within metE at 832.599 kb on - strand, within metE at 832.659 kb on - strand, within metE at 832.772 kb on + strand, within metE at 832.772 kb on + strand, within metE at 832.779 kb on + strand, within metE at 832.779 kb on + strand, within metE at 832.779 kb on + strand, within metE at 832.780 kb on - strand, within metE at 832.780 kb on - strand, within metE at 832.788 kb on - strand, within metE at 832.806 kb on + strand, within metE at 832.811 kb on + strand, within metE at 832.811 kb on + strand, within metE at 832.819 kb on - strand, within metE at 832.836 kb on - strand, within metE at 832.847 kb on - strand, within metE at 832.988 kb on - strand, within metE at 833.152 kb on + strand, within metE at 833.160 kb on - strand, within metE at 833.261 kb on + strand, within metE at 833.289 kb on + strand, within metE at 833.380 kb on + strand at 833.380 kb on + strand at 833.380 kb on + strand at 833.380 kb on + strand at 833.463 kb on + strand at 833.476 kb on + strand at 833.480 kb on + strand at 833.499 kb on + strand at 833.499 kb on - strand at 833.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 830,273 + metR SO0817 0.12 -3.2 830,355 - metR SO0817 0.21 -2.1 830,481 + metR SO0817 0.35 +1.2 830,600 - metR SO0817 0.48 -2.7 830,620 + metR SO0817 0.51 -0.4 830,628 - metR SO0817 0.51 -3.7 830,662 + metR SO0817 0.55 -4.0 830,700 + metR SO0817 0.59 -2.6 830,706 + metR SO0817 0.60 -3.8 830,743 + metR SO0817 0.64 -1.4 830,789 - metR SO0817 0.69 -3.3 830,799 - metR SO0817 0.70 -2.2 830,835 + metR SO0817 0.74 -2.7 830,850 - metR SO0817 0.76 -2.8 830,867 + metR SO0817 0.78 -1.6 830,902 - metR SO0817 0.82 -3.1 830,993 + -2.2 831,307 + -3.8 831,307 + -2.8 831,358 + -2.7 831,366 + -3.8 831,562 + metE SO0818 0.13 -5.7 831,617 - metE SO0818 0.15 -3.3 831,645 - metE SO0818 0.17 -1.6 831,673 + metE SO0818 0.18 -2.0 831,716 + metE SO0818 0.20 -2.2 831,740 + metE SO0818 0.21 -3.3 831,757 + metE SO0818 0.21 -2.5 831,972 + metE SO0818 0.31 -2.6 831,997 + metE SO0818 0.32 -2.1 832,065 + metE SO0818 0.35 -2.4 832,066 + metE SO0818 0.35 -2.5 832,139 - metE SO0818 0.38 -2.9 832,139 - metE SO0818 0.38 -2.2 832,146 - metE SO0818 0.39 -0.4 832,202 + metE SO0818 0.41 -3.0 832,256 + metE SO0818 0.43 -2.4 832,264 - metE SO0818 0.44 -3.8 832,286 - metE SO0818 0.45 -2.0 832,373 + metE SO0818 0.48 -3.4 832,381 - metE SO0818 0.49 -2.2 832,401 + metE SO0818 0.50 -3.7 832,481 - metE SO0818 0.53 -4.3 832,481 - metE SO0818 0.53 -0.4 832,535 - metE SO0818 0.56 -3.0 832,599 - metE SO0818 0.58 -0.4 832,659 - metE SO0818 0.61 -1.4 832,772 + metE SO0818 0.66 -3.2 832,772 + metE SO0818 0.66 -4.0 832,779 + metE SO0818 0.66 -2.1 832,779 + metE SO0818 0.66 -1.6 832,779 + metE SO0818 0.66 -4.5 832,780 - metE SO0818 0.66 -3.7 832,780 - metE SO0818 0.66 -2.2 832,788 - metE SO0818 0.67 -3.5 832,806 + metE SO0818 0.67 -1.6 832,811 + metE SO0818 0.68 -3.5 832,811 + metE SO0818 0.68 -4.7 832,819 - metE SO0818 0.68 -2.5 832,836 - metE SO0818 0.69 -3.1 832,847 - metE SO0818 0.69 -2.1 832,988 - metE SO0818 0.75 -3.9 833,152 + metE SO0818 0.83 -2.8 833,160 - metE SO0818 0.83 -3.4 833,261 + metE SO0818 0.87 -1.6 833,289 + metE SO0818 0.89 -4.6 833,380 + +0.2 833,380 + -3.3 833,380 + -5.0 833,380 + -4.5 833,463 + -2.6 833,476 + -0.4 833,480 + -3.5 833,499 + -3.4 833,499 - -2.8 833,580 + -2.7
Or see this region's nucleotide sequence