Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0445 and SO0447 are separated by 332 nucleotides SO0447 and SO0448 are separated by 3 nucleotides SO0448 and SO0449 are separated by 6 nucleotides SO0449 and SO0450 are separated by 72 nucleotides
SO0445: SO0445 - hflC protein, putative (NCBI ptt file), at 473,830 to 474,720
SO0445
SO0447: SO0447 - hypothetical protein (NCBI ptt file), at 475,053 to 475,307
SO0447
SO0448: SO0448 - hypothetical protein (NCBI ptt file), at 475,311 to 475,601
SO0448
SO0449: SO0449 - conserved hypothetical protein (NCBI ptt file), at 475,608 to 477,227
SO0449
SO0450: SO0450 - major facilitator family protein (NCBI ptt file), at 477,300 to 478,463
SO0450
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -1
0
1
2
3 at 474.614 kb on - strand, within SO0445 at 474.665 kb on + strand at 474.734 kb on - strand at 474.750 kb on - strand at 474.905 kb on - strand at 474.905 kb on - strand at 475.083 kb on + strand, within SO0447 at 475.141 kb on + strand, within SO0447 at 475.177 kb on + strand, within SO0447 at 475.177 kb on + strand, within SO0447 at 475.179 kb on - strand, within SO0447 at 475.182 kb on + strand, within SO0447 at 475.185 kb on - strand, within SO0447 at 475.362 kb on - strand, within SO0448 at 475.424 kb on + strand, within SO0448 at 475.431 kb on - strand, within SO0448 at 475.478 kb on + strand, within SO0448 at 475.598 kb on - strand at 475.635 kb on - strand at 475.635 kb on - strand at 475.652 kb on + strand at 475.718 kb on + strand at 475.718 kb on + strand at 475.875 kb on + strand, within SO0449 at 475.928 kb on + strand, within SO0449 at 475.928 kb on + strand, within SO0449 at 476.137 kb on + strand, within SO0449 at 476.199 kb on + strand, within SO0449 at 476.199 kb on + strand, within SO0449 at 476.248 kb on + strand, within SO0449 at 476.248 kb on + strand, within SO0449 at 476.282 kb on + strand, within SO0449 at 476.290 kb on - strand, within SO0449 at 476.381 kb on + strand, within SO0449 at 476.399 kb on - strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.788 kb on + strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.936 kb on + strand, within SO0449 at 477.071 kb on + strand at 477.079 kb on + strand at 477.124 kb on + strand at 477.161 kb on + strand at 477.199 kb on + strand at 477.268 kb on - strand at 477.279 kb on - strand at 477.300 kb on - strand at 477.313 kb on + strand at 477.325 kb on + strand at 477.347 kb on - strand at 477.398 kb on - strand at 477.415 kb on - strand at 477.540 kb on + strand, within SO0450 at 477.593 kb on - strand, within SO0450 at 477.613 kb on + strand, within SO0450 at 477.699 kb on + strand, within SO0450 at 477.707 kb on + strand, within SO0450 at 477.707 kb on - strand, within SO0450 at 477.804 kb on - strand, within SO0450 at 477.875 kb on + strand, within SO0450 at 478.047 kb on + strand, within SO0450 at 478.193 kb on + strand, within SO0450 at 478.201 kb on - strand, within SO0450
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 474,614 - SO0445 0.88 +1.0 474,665 + -0.2 474,734 - +1.3 474,750 - +0.2 474,905 - -0.5 474,905 - -0.9 475,083 + SO0447 0.12 +0.8 475,141 + SO0447 0.35 -1.6 475,177 + SO0447 0.49 +2.5 475,177 + SO0447 0.49 +1.3 475,179 - SO0447 0.49 +1.4 475,182 + SO0447 0.51 +0.7 475,185 - SO0447 0.52 +0.7 475,362 - SO0448 0.18 -0.3 475,424 + SO0448 0.39 +0.6 475,431 - SO0448 0.41 +1.4 475,478 + SO0448 0.57 -0.9 475,598 - +0.4 475,635 - +0.2 475,635 - +0.6 475,652 + -0.0 475,718 + +1.9 475,718 + +0.2 475,875 + SO0449 0.16 +0.9 475,928 + SO0449 0.20 +0.1 475,928 + SO0449 0.20 +0.0 476,137 + SO0449 0.33 +0.9 476,199 + SO0449 0.36 -0.8 476,199 + SO0449 0.36 -0.1 476,248 + SO0449 0.40 -0.0 476,248 + SO0449 0.40 -0.4 476,282 + SO0449 0.42 -0.0 476,290 - SO0449 0.42 +1.1 476,381 + SO0449 0.48 -0.4 476,399 - SO0449 0.49 +0.1 476,551 + SO0449 0.58 -0.1 476,551 + SO0449 0.58 +3.0 476,551 + SO0449 0.58 +0.0 476,551 + SO0449 0.58 +0.6 476,551 + SO0449 0.58 +0.6 476,551 + SO0449 0.58 +1.5 476,559 - SO0449 0.59 +0.7 476,559 - SO0449 0.59 +0.5 476,559 - SO0449 0.59 +0.5 476,559 - SO0449 0.59 +1.2 476,559 - SO0449 0.59 +0.5 476,559 - SO0449 0.59 +1.5 476,559 - SO0449 0.59 +2.0 476,559 - SO0449 0.59 +0.9 476,559 - SO0449 0.59 +0.4 476,559 - SO0449 0.59 +1.5 476,788 + SO0449 0.73 +0.8 476,796 - SO0449 0.73 -1.4 476,796 - SO0449 0.73 -1.0 476,796 - SO0449 0.73 -1.2 476,936 + SO0449 0.82 -0.4 477,071 + -0.7 477,079 + +1.2 477,124 + +0.3 477,161 + -1.7 477,199 + +0.9 477,268 - +0.8 477,279 - -0.2 477,300 - +1.3 477,313 + -0.1 477,325 + -0.6 477,347 - +0.5 477,398 - -0.1 477,415 - +0.2 477,540 + SO0450 0.21 +0.0 477,593 - SO0450 0.25 +0.1 477,613 + SO0450 0.27 -1.0 477,699 + SO0450 0.34 -0.1 477,707 + SO0450 0.35 -0.6 477,707 - SO0450 0.35 -0.3 477,804 - SO0450 0.43 -0.1 477,875 + SO0450 0.49 +1.0 478,047 + SO0450 0.64 +0.5 478,193 + SO0450 0.77 -0.0 478,201 - SO0450 0.77 +1.0
Or see this region's nucleotide sequence