Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0364 and SO0365 are separated by 105 nucleotides SO0365 and SO0366 are separated by 15 nucleotides
SO0364: SO0364 - conserved hypothetical protein (NCBI ptt file), at 374,541 to 375,581
SO0364
SO0365: SO0365 - hypothetical permeases of the major facilitator superfamily (NCBI ptt file), at 375,687 to 377,111
SO0365
SO0366: SO0366 - hypothetical protein (NCBI ptt file), at 377,127 to 377,945
SO0366
Position (kb) 375
376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.693 kb on + strand, within SO0364 at 374.745 kb on - strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.778 kb on - strand, within SO0364 at 374.799 kb on + strand, within SO0364 at 374.812 kb on - strand, within SO0364 at 375.018 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.034 kb on - strand, within SO0364 at 375.237 kb on + strand, within SO0364 at 375.403 kb on + strand, within SO0364 at 375.411 kb on - strand, within SO0364 at 375.524 kb on + strand at 375.754 kb on + strand at 375.762 kb on - strand at 375.762 kb on - strand at 375.776 kb on + strand at 375.856 kb on + strand, within SO0365 at 376.075 kb on - strand, within SO0365 at 376.121 kb on + strand, within SO0365 at 376.186 kb on + strand, within SO0365 at 376.215 kb on + strand, within SO0365 at 376.215 kb on + strand, within SO0365 at 376.263 kb on - strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.632 kb on + strand, within SO0365 at 376.728 kb on - strand, within SO0365 at 376.781 kb on + strand, within SO0365 at 376.786 kb on + strand, within SO0365 at 376.808 kb on - strand, within SO0365 at 376.890 kb on - strand, within SO0365 at 376.970 kb on - strand at 376.974 kb on - strand at 376.979 kb on - strand at 376.989 kb on - strand at 377.012 kb on - strand at 377.074 kb on + strand at 377.161 kb on + strand at 377.222 kb on - strand, within SO0366 at 377.227 kb on - strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.238 kb on - strand, within SO0366 at 377.238 kb on - strand, within SO0366 at 377.444 kb on + strand, within SO0366 at 377.452 kb on - strand, within SO0366 at 377.467 kb on + strand, within SO0366 at 377.504 kb on + strand, within SO0366 at 377.689 kb on - strand, within SO0366 at 377.733 kb on + strand, within SO0366 at 377.830 kb on + strand, within SO0366 at 377.882 kb on + strand at 377.894 kb on + strand at 377.946 kb on + strand at 377.949 kb on - strand at 377.954 kb on - strand at 377.956 kb on + strand at 377.958 kb on + strand at 377.958 kb on + strand at 377.960 kb on + strand at 378.038 kb on - strand at 378.038 kb on - strand at 378.047 kb on + strand at 378.047 kb on + strand at 378.047 kb on + strand at 378.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 374,693 + SO0364 0.15 -0.1 374,745 - SO0364 0.20 +0.6 374,770 + SO0364 0.22 +0.3 374,770 + SO0364 0.22 -0.0 374,778 - SO0364 0.23 +0.1 374,799 + SO0364 0.25 +0.8 374,812 - SO0364 0.26 -0.6 375,018 + SO0364 0.46 +1.5 375,026 + SO0364 0.47 -0.5 375,026 + SO0364 0.47 -0.2 375,034 - SO0364 0.47 -0.0 375,237 + SO0364 0.67 -0.3 375,403 + SO0364 0.83 -0.5 375,411 - SO0364 0.84 -0.1 375,524 + -0.1 375,754 + -0.5 375,762 - -0.1 375,762 - -0.4 375,776 + -0.1 375,856 + SO0365 0.12 +1.0 376,075 - SO0365 0.27 -1.1 376,121 + SO0365 0.30 -0.1 376,186 + SO0365 0.35 +1.1 376,215 + SO0365 0.37 +0.9 376,215 + SO0365 0.37 +0.1 376,263 - SO0365 0.40 -0.5 376,327 + SO0365 0.45 -0.2 376,327 + SO0365 0.45 -0.6 376,327 + SO0365 0.45 -0.5 376,632 + SO0365 0.66 -1.9 376,728 - SO0365 0.73 +0.9 376,781 + SO0365 0.77 +0.0 376,786 + SO0365 0.77 +0.1 376,808 - SO0365 0.79 +0.0 376,890 - SO0365 0.84 -0.7 376,970 - -0.3 376,974 - +1.5 376,979 - -0.1 376,989 - -1.3 377,012 - -1.2 377,074 + -1.3 377,161 + -0.0 377,222 - SO0366 0.12 +0.2 377,227 - SO0366 0.12 -0.8 377,230 + SO0366 0.13 -0.3 377,230 + SO0366 0.13 +1.5 377,230 + SO0366 0.13 +0.5 377,238 - SO0366 0.14 +1.0 377,238 - SO0366 0.14 +0.1 377,444 + SO0366 0.39 +2.6 377,452 - SO0366 0.40 -1.4 377,467 + SO0366 0.42 +0.4 377,504 + SO0366 0.46 +0.8 377,689 - SO0366 0.69 -0.2 377,733 + SO0366 0.74 -0.1 377,830 + SO0366 0.86 +1.1 377,882 + +0.9 377,894 + +0.3 377,946 + +0.9 377,949 - -0.7 377,954 - +0.1 377,956 + -0.4 377,958 + +0.2 377,958 + +0.4 377,960 + -0.1 378,038 - -0.4 378,038 - +0.5 378,047 + -0.5 378,047 + -0.1 378,047 + +0.8 378,055 - +0.7
Or see this region's nucleotide sequence