Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1617

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1616 and Dshi_1617 are separated by 3 nucleotidesDshi_1617 and Dshi_1618 are separated by 57 nucleotides Dshi_1616: Dshi_1616 - Beta-ketoacyl synthase (RefSeq), at 1,680,682 to 1,681,893 _1616 Dshi_1617: Dshi_1617 - phosphopantetheine-binding (RefSeq), at 1,681,897 to 1,682,166 _1617 Dshi_1618: Dshi_1618 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (RefSeq), at 1,682,224 to 1,683,315 _1618 Position (kb) 1681 1682 1683Strain fitness (log2 ratio) -2 -1 0 1at 1680.953 kb on + strand, within Dshi_1616at 1681.017 kb on + strand, within Dshi_1616at 1681.227 kb on - strand, within Dshi_1616at 1681.349 kb on - strand, within Dshi_1616at 1681.364 kb on - strand, within Dshi_1616at 1681.364 kb on - strand, within Dshi_1616at 1681.395 kb on + strand, within Dshi_1616at 1681.829 kb on - strandat 1681.829 kb on - strandat 1681.917 kb on + strandat 1682.049 kb on + strand, within Dshi_1617at 1682.049 kb on + strand, within Dshi_1617at 1682.107 kb on + strand, within Dshi_1617at 1682.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,680,953 + Dshi_1616 0.22 +0.1
1,681,017 + Dshi_1616 0.28 -0.3
1,681,227 - Dshi_1616 0.45 -1.8
1,681,349 - Dshi_1616 0.55 -0.5
1,681,364 - Dshi_1616 0.56 -1.3
1,681,364 - Dshi_1616 0.56 +1.2
1,681,395 + Dshi_1616 0.59 -0.4
1,681,829 - -0.4
1,681,829 - -0.2
1,681,917 + +0.2
1,682,049 + Dshi_1617 0.56 -0.7
1,682,049 + Dshi_1617 0.56 -0.9
1,682,107 + Dshi_1617 0.78 +0.2
1,682,209 - -0.4

Or see this region's nucleotide sequence