Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0699 and Dshi_0700 are separated by 59 nucleotides Dshi_0700 and Dshi_0701 are separated by 52 nucleotides Dshi_0701 and Dshi_0702 overlap by 4 nucleotides
Dshi_0699: Dshi_0699 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 705,226 to 706,539
_0699
Dshi_0700: Dshi_0700 - AMP-dependent synthetase and ligase (RefSeq), at 706,599 to 708,116
_0700
Dshi_0701: Dshi_0701 - Methyltransferase type 12 (RefSeq), at 708,169 to 708,822
_0701
Dshi_0702: Dshi_0702 - WbqC-like family protein (RefSeq), at 708,819 to 709,466
_0702
Position (kb) 706
707
708
709 Strain fitness (log2 ratio) -1
0
1 at 705.610 kb on - strand, within Dshi_0699 at 705.626 kb on - strand, within Dshi_0699 at 706.010 kb on - strand, within Dshi_0699 at 706.023 kb on + strand, within Dshi_0699 at 706.183 kb on - strand, within Dshi_0699 at 706.212 kb on + strand, within Dshi_0699 at 706.315 kb on - strand, within Dshi_0699 at 706.320 kb on - strand, within Dshi_0699 at 706.325 kb on - strand, within Dshi_0699 at 706.406 kb on - strand, within Dshi_0699 at 706.453 kb on - strand at 706.453 kb on - strand at 706.535 kb on + strand at 706.557 kb on + strand at 706.557 kb on + strand at 706.557 kb on + strand at 706.565 kb on - strand at 706.565 kb on - strand at 706.565 kb on - strand at 706.565 kb on - strand at 706.624 kb on + strand at 706.627 kb on - strand at 706.715 kb on + strand at 706.741 kb on + strand at 706.745 kb on + strand at 706.745 kb on + strand at 706.753 kb on - strand, within Dshi_0700 at 706.802 kb on + strand, within Dshi_0700 at 706.820 kb on + strand, within Dshi_0700 at 706.846 kb on + strand, within Dshi_0700 at 706.880 kb on - strand, within Dshi_0700 at 706.899 kb on + strand, within Dshi_0700 at 706.931 kb on + strand, within Dshi_0700 at 706.941 kb on - strand, within Dshi_0700 at 706.947 kb on + strand, within Dshi_0700 at 707.065 kb on - strand, within Dshi_0700 at 707.084 kb on + strand, within Dshi_0700 at 707.084 kb on + strand, within Dshi_0700 at 707.084 kb on + strand, within Dshi_0700 at 707.092 kb on - strand, within Dshi_0700 at 707.163 kb on - strand, within Dshi_0700 at 707.185 kb on - strand, within Dshi_0700 at 707.211 kb on - strand, within Dshi_0700 at 707.213 kb on + strand, within Dshi_0700 at 707.224 kb on + strand, within Dshi_0700 at 707.268 kb on + strand, within Dshi_0700 at 707.400 kb on + strand, within Dshi_0700 at 707.615 kb on + strand, within Dshi_0700 at 707.643 kb on - strand, within Dshi_0700 at 707.684 kb on + strand, within Dshi_0700 at 707.736 kb on + strand, within Dshi_0700 at 707.741 kb on + strand, within Dshi_0700 at 707.741 kb on + strand, within Dshi_0700 at 707.842 kb on - strand, within Dshi_0700 at 707.870 kb on - strand, within Dshi_0700 at 707.872 kb on + strand, within Dshi_0700 at 707.931 kb on + strand, within Dshi_0700 at 707.939 kb on - strand, within Dshi_0700 at 707.997 kb on - strand at 707.997 kb on - strand at 708.014 kb on + strand at 708.031 kb on - strand at 708.031 kb on - strand at 708.075 kb on + strand at 708.082 kb on + strand at 708.105 kb on + strand at 708.260 kb on - strand, within Dshi_0701 at 708.361 kb on + strand, within Dshi_0701 at 708.377 kb on + strand, within Dshi_0701 at 708.380 kb on - strand, within Dshi_0701 at 708.384 kb on - strand, within Dshi_0701 at 708.539 kb on + strand, within Dshi_0701 at 708.582 kb on + strand, within Dshi_0701 at 708.673 kb on + strand, within Dshi_0701 at 708.809 kb on - strand at 708.945 kb on + strand, within Dshi_0702 at 708.945 kb on + strand, within Dshi_0702 at 709.034 kb on - strand, within Dshi_0702
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 705,610 - Dshi_0699 0.29 +0.8 705,626 - Dshi_0699 0.30 -0.5 706,010 - Dshi_0699 0.60 +0.4 706,023 + Dshi_0699 0.61 -0.2 706,183 - Dshi_0699 0.73 +0.2 706,212 + Dshi_0699 0.75 -0.0 706,315 - Dshi_0699 0.83 -0.4 706,320 - Dshi_0699 0.83 -0.7 706,325 - Dshi_0699 0.84 +1.3 706,406 - Dshi_0699 0.90 +0.3 706,453 - -1.1 706,453 - +0.2 706,535 + +0.3 706,557 + -0.2 706,557 + -0.1 706,557 + +1.4 706,565 - -0.7 706,565 - -0.5 706,565 - +0.1 706,565 - +0.1 706,624 + -0.5 706,627 - -0.3 706,715 + -1.1 706,741 + -0.7 706,745 + -0.2 706,745 + +0.4 706,753 - Dshi_0700 0.10 +0.0 706,802 + Dshi_0700 0.13 -0.3 706,820 + Dshi_0700 0.15 +0.6 706,846 + Dshi_0700 0.16 +0.6 706,880 - Dshi_0700 0.19 +0.5 706,899 + Dshi_0700 0.20 +0.7 706,931 + Dshi_0700 0.22 -0.3 706,941 - Dshi_0700 0.23 +0.0 706,947 + Dshi_0700 0.23 +0.5 707,065 - Dshi_0700 0.31 +0.3 707,084 + Dshi_0700 0.32 +0.1 707,084 + Dshi_0700 0.32 +0.2 707,084 + Dshi_0700 0.32 -0.4 707,092 - Dshi_0700 0.32 +0.1 707,163 - Dshi_0700 0.37 +0.7 707,185 - Dshi_0700 0.39 -0.2 707,211 - Dshi_0700 0.40 +1.5 707,213 + Dshi_0700 0.40 +1.1 707,224 + Dshi_0700 0.41 +0.7 707,268 + Dshi_0700 0.44 +0.7 707,400 + Dshi_0700 0.53 +0.6 707,615 + Dshi_0700 0.67 -0.0 707,643 - Dshi_0700 0.69 -0.1 707,684 + Dshi_0700 0.71 +0.7 707,736 + Dshi_0700 0.75 +0.1 707,741 + Dshi_0700 0.75 +0.3 707,741 + Dshi_0700 0.75 -0.4 707,842 - Dshi_0700 0.82 -1.1 707,870 - Dshi_0700 0.84 -0.1 707,872 + Dshi_0700 0.84 -0.4 707,931 + Dshi_0700 0.88 +0.2 707,939 - Dshi_0700 0.88 +0.3 707,997 - +0.4 707,997 - +0.0 708,014 + -0.2 708,031 - -0.3 708,031 - +0.2 708,075 + -0.6 708,082 + +0.2 708,105 + -0.2 708,260 - Dshi_0701 0.14 -0.6 708,361 + Dshi_0701 0.29 +0.7 708,377 + Dshi_0701 0.32 +0.1 708,380 - Dshi_0701 0.32 +0.2 708,384 - Dshi_0701 0.33 +0.3 708,539 + Dshi_0701 0.57 +0.7 708,582 + Dshi_0701 0.63 -0.1 708,673 + Dshi_0701 0.77 +0.5 708,809 - +0.9 708,945 + Dshi_0702 0.19 +0.8 708,945 + Dshi_0702 0.19 +0.6 709,034 - Dshi_0702 0.33 +0.1
Or see this region's nucleotide sequence