Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0641 and Dshi_0642 are separated by 2 nucleotides Dshi_0642 and Dshi_0643 are separated by 10 nucleotides Dshi_0643 and Dshi_0644 are separated by 293 nucleotides
Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374
_0641
Dshi_0642: Dshi_0642 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 640,377 to 641,315
_0642
Dshi_0643: Dshi_0643 - short-chain dehydrogenase/reductase SDR (RefSeq), at 641,326 to 642,117
_0643
Dshi_0644: Dshi_0644 - excinuclease ABC, C subunit (RefSeq), at 642,411 to 644,306
_0644
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1 at 640.377 kb on - strand at 640.524 kb on - strand, within Dshi_0642 at 641.098 kb on + strand, within Dshi_0642 at 642.107 kb on + strand at 642.164 kb on + strand at 642.170 kb on - strand at 642.344 kb on - strand at 642.369 kb on + strand at 642.389 kb on + strand at 642.630 kb on + strand, within Dshi_0644 at 642.720 kb on - strand, within Dshi_0644 at 642.722 kb on + strand, within Dshi_0644 at 642.915 kb on + strand, within Dshi_0644 at 642.993 kb on - strand, within Dshi_0644 at 643.077 kb on - strand, within Dshi_0644 at 643.108 kb on + strand, within Dshi_0644
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 640,377 - -0.6 640,524 - Dshi_0642 0.16 -1.0 641,098 + Dshi_0642 0.77 -0.4 642,107 + -0.4 642,164 + +0.7 642,170 - +1.4 642,344 - +1.6 642,369 + +0.3 642,389 + +1.4 642,630 + Dshi_0644 0.12 -1.5 642,720 - Dshi_0644 0.16 -0.7 642,722 + Dshi_0644 0.16 -0.2 642,915 + Dshi_0644 0.27 -1.6 642,993 - Dshi_0644 0.31 +0.5 643,077 - Dshi_0644 0.35 +0.0 643,108 + Dshi_0644 0.37 -1.2
Or see this region's nucleotide sequence