Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0494 and Dshi_0495 are separated by 58 nucleotides Dshi_0495 and Dshi_0496 are separated by 206 nucleotides Dshi_0496 and Dshi_0497 are separated by 99 nucleotides Dshi_0497 and Dshi_0498 overlap by 4 nucleotides
Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028
_0494
Dshi_0495: Dshi_0495 - hypothetical protein (RefSeq), at 480,087 to 480,497
_0495
Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722
_0496
Dshi_0497: Dshi_0497 - hypothetical protein (RefSeq), at 482,822 to 483,556
_0497
Dshi_0498: Dshi_0498 - hypothetical protein (RefSeq), at 483,553 to 484,110
_0498
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -1
0
1 at 479.714 kb on - strand, within Dshi_0494 at 479.723 kb on + strand, within Dshi_0494 at 479.853 kb on + strand, within Dshi_0494 at 479.932 kb on + strand at 479.947 kb on + strand at 479.987 kb on - strand at 480.109 kb on - strand at 480.139 kb on + strand, within Dshi_0495 at 480.216 kb on + strand, within Dshi_0495 at 480.264 kb on + strand, within Dshi_0495 at 480.336 kb on + strand, within Dshi_0495 at 480.393 kb on + strand, within Dshi_0495 at 480.393 kb on + strand, within Dshi_0495 at 480.451 kb on + strand, within Dshi_0495 at 480.456 kb on + strand, within Dshi_0495 at 480.478 kb on + strand at 480.478 kb on - strand at 480.486 kb on - strand at 480.497 kb on + strand at 480.497 kb on + strand at 480.531 kb on + strand at 480.626 kb on - strand at 480.658 kb on + strand at 480.660 kb on + strand at 480.668 kb on + strand at 480.668 kb on - strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.689 kb on - strand at 480.697 kb on - strand at 480.720 kb on - strand at 480.773 kb on + strand at 480.829 kb on - strand at 480.836 kb on - strand at 480.863 kb on + strand at 480.888 kb on - strand at 480.888 kb on - strand at 480.892 kb on - strand at 480.920 kb on + strand, within Dshi_0496 at 480.988 kb on - strand, within Dshi_0496 at 481.038 kb on + strand, within Dshi_0496 at 481.046 kb on + strand, within Dshi_0496 at 481.084 kb on + strand, within Dshi_0496 at 481.092 kb on - strand, within Dshi_0496 at 481.123 kb on + strand, within Dshi_0496 at 481.134 kb on + strand, within Dshi_0496 at 481.134 kb on + strand, within Dshi_0496 at 481.140 kb on + strand, within Dshi_0496 at 481.142 kb on - strand, within Dshi_0496 at 481.142 kb on - strand, within Dshi_0496 at 481.165 kb on - strand, within Dshi_0496 at 481.181 kb on + strand, within Dshi_0496 at 481.189 kb on - strand, within Dshi_0496 at 481.295 kb on + strand, within Dshi_0496 at 481.296 kb on - strand, within Dshi_0496 at 481.320 kb on + strand, within Dshi_0496 at 481.325 kb on - strand, within Dshi_0496 at 481.334 kb on + strand, within Dshi_0496 at 481.353 kb on - strand, within Dshi_0496 at 481.378 kb on + strand, within Dshi_0496 at 481.378 kb on + strand, within Dshi_0496 at 481.386 kb on - strand, within Dshi_0496 at 481.390 kb on - strand, within Dshi_0496 at 481.413 kb on + strand, within Dshi_0496 at 481.428 kb on + strand, within Dshi_0496 at 481.461 kb on + strand, within Dshi_0496 at 481.461 kb on + strand, within Dshi_0496 at 481.469 kb on - strand, within Dshi_0496 at 481.527 kb on + strand, within Dshi_0496 at 481.527 kb on + strand, within Dshi_0496 at 481.646 kb on + strand, within Dshi_0496 at 481.650 kb on - strand, within Dshi_0496 at 481.709 kb on - strand, within Dshi_0496 at 481.737 kb on - strand, within Dshi_0496 at 481.760 kb on - strand, within Dshi_0496 at 481.977 kb on + strand, within Dshi_0496 at 481.985 kb on - strand, within Dshi_0496 at 481.985 kb on - strand, within Dshi_0496 at 482.061 kb on + strand, within Dshi_0496 at 482.108 kb on - strand, within Dshi_0496 at 482.126 kb on - strand, within Dshi_0496 at 482.139 kb on + strand, within Dshi_0496 at 482.147 kb on + strand, within Dshi_0496 at 482.180 kb on + strand, within Dshi_0496 at 482.190 kb on + strand, within Dshi_0496 at 482.280 kb on + strand, within Dshi_0496 at 482.329 kb on + strand, within Dshi_0496 at 482.330 kb on + strand, within Dshi_0496 at 482.336 kb on + strand, within Dshi_0496 at 482.349 kb on - strand, within Dshi_0496 at 482.351 kb on + strand, within Dshi_0496 at 482.351 kb on + strand, within Dshi_0496 at 482.373 kb on - strand, within Dshi_0496 at 482.383 kb on - strand, within Dshi_0496 at 482.511 kb on + strand, within Dshi_0496 at 482.519 kb on - strand, within Dshi_0496 at 482.540 kb on + strand at 482.558 kb on + strand at 482.564 kb on + strand at 482.564 kb on + strand at 482.564 kb on + strand at 482.606 kb on - strand at 482.612 kb on - strand at 482.637 kb on + strand at 482.689 kb on - strand at 482.695 kb on - strand at 482.755 kb on - strand at 482.769 kb on - strand at 482.776 kb on + strand at 482.776 kb on + strand at 482.776 kb on + strand at 482.776 kb on - strand at 482.784 kb on - strand at 482.784 kb on - strand at 482.784 kb on - strand at 482.816 kb on + strand at 482.824 kb on - strand at 482.859 kb on - strand at 482.871 kb on + strand at 482.879 kb on - strand at 482.895 kb on - strand at 482.900 kb on - strand, within Dshi_0497 at 482.922 kb on - strand, within Dshi_0497 at 482.934 kb on + strand, within Dshi_0497 at 482.939 kb on + strand, within Dshi_0497 at 482.961 kb on - strand, within Dshi_0497 at 482.996 kb on - strand, within Dshi_0497 at 483.001 kb on - strand, within Dshi_0497 at 483.059 kb on + strand, within Dshi_0497 at 483.094 kb on - strand, within Dshi_0497 at 483.176 kb on - strand, within Dshi_0497 at 483.205 kb on + strand, within Dshi_0497 at 483.226 kb on + strand, within Dshi_0497 at 483.274 kb on + strand, within Dshi_0497 at 483.344 kb on + strand, within Dshi_0497 at 483.344 kb on + strand, within Dshi_0497 at 483.344 kb on - strand, within Dshi_0497 at 483.395 kb on + strand, within Dshi_0497 at 483.396 kb on - strand, within Dshi_0497 at 483.398 kb on + strand, within Dshi_0497 at 483.403 kb on + strand, within Dshi_0497 at 483.424 kb on - strand, within Dshi_0497 at 483.429 kb on - strand, within Dshi_0497 at 483.436 kb on + strand, within Dshi_0497 at 483.436 kb on - strand, within Dshi_0497 at 483.545 kb on - strand at 483.569 kb on + strand at 483.620 kb on + strand, within Dshi_0498 at 483.628 kb on - strand, within Dshi_0498 at 483.628 kb on - strand, within Dshi_0498
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 479,714 - Dshi_0494 0.75 +0.7 479,723 + Dshi_0494 0.76 -0.3 479,853 + Dshi_0494 0.86 +0.2 479,932 + -0.6 479,947 + -0.8 479,987 - -0.1 480,109 - +0.0 480,139 + Dshi_0495 0.13 -0.2 480,216 + Dshi_0495 0.31 -0.2 480,264 + Dshi_0495 0.43 +1.5 480,336 + Dshi_0495 0.61 +0.1 480,393 + Dshi_0495 0.74 +0.4 480,393 + Dshi_0495 0.74 +0.0 480,451 + Dshi_0495 0.89 -0.3 480,456 + Dshi_0495 0.90 +0.0 480,478 + +0.4 480,478 - -0.3 480,486 - +0.2 480,497 + -0.0 480,497 + +1.5 480,531 + +0.1 480,626 - +0.0 480,658 + +0.3 480,660 + +1.4 480,668 + -0.1 480,668 - -0.1 480,676 - -0.2 480,676 - +0.4 480,676 - -0.2 480,689 - +1.0 480,697 - -1.0 480,720 - +0.3 480,773 + -0.2 480,829 - +0.9 480,836 - -0.2 480,863 + +0.1 480,888 - +0.3 480,888 - -0.3 480,892 - -0.3 480,920 + Dshi_0496 0.11 +0.6 480,988 - Dshi_0496 0.14 +0.8 481,038 + Dshi_0496 0.17 +0.1 481,046 + Dshi_0496 0.17 +0.1 481,084 + Dshi_0496 0.19 -0.6 481,092 - Dshi_0496 0.19 +0.0 481,123 + Dshi_0496 0.21 -0.2 481,134 + Dshi_0496 0.21 -1.0 481,134 + Dshi_0496 0.21 +0.1 481,140 + Dshi_0496 0.22 +1.2 481,142 - Dshi_0496 0.22 +0.3 481,142 - Dshi_0496 0.22 +0.7 481,165 - Dshi_0496 0.23 -0.9 481,181 + Dshi_0496 0.24 -0.3 481,189 - Dshi_0496 0.24 -0.4 481,295 + Dshi_0496 0.29 +0.5 481,296 - Dshi_0496 0.29 +0.9 481,320 + Dshi_0496 0.31 +0.0 481,325 - Dshi_0496 0.31 -0.3 481,334 + Dshi_0496 0.31 +0.1 481,353 - Dshi_0496 0.32 +0.7 481,378 + Dshi_0496 0.33 -0.9 481,378 + Dshi_0496 0.33 +0.7 481,386 - Dshi_0496 0.34 -0.3 481,390 - Dshi_0496 0.34 +0.1 481,413 + Dshi_0496 0.35 +0.1 481,428 + Dshi_0496 0.36 -0.3 481,461 + Dshi_0496 0.37 -0.5 481,461 + Dshi_0496 0.37 +1.0 481,469 - Dshi_0496 0.38 +0.2 481,527 + Dshi_0496 0.41 +0.4 481,527 + Dshi_0496 0.41 -0.4 481,646 + Dshi_0496 0.47 +0.1 481,650 - Dshi_0496 0.47 -0.2 481,709 - Dshi_0496 0.50 -0.7 481,737 - Dshi_0496 0.51 +0.5 481,760 - Dshi_0496 0.52 +0.2 481,977 + Dshi_0496 0.63 +0.8 481,985 - Dshi_0496 0.63 -0.3 481,985 - Dshi_0496 0.63 +0.3 482,061 + Dshi_0496 0.67 -1.7 482,108 - Dshi_0496 0.70 +0.2 482,126 - Dshi_0496 0.70 -0.2 482,139 + Dshi_0496 0.71 -0.0 482,147 + Dshi_0496 0.71 +0.3 482,180 + Dshi_0496 0.73 +0.8 482,190 + Dshi_0496 0.74 +0.7 482,280 + Dshi_0496 0.78 -0.8 482,329 + Dshi_0496 0.80 -0.3 482,330 + Dshi_0496 0.81 +0.1 482,336 + Dshi_0496 0.81 +0.2 482,349 - Dshi_0496 0.81 +0.1 482,351 + Dshi_0496 0.82 +0.9 482,351 + Dshi_0496 0.82 +1.3 482,373 - Dshi_0496 0.83 -1.2 482,383 - Dshi_0496 0.83 +0.3 482,511 + Dshi_0496 0.89 +0.1 482,519 - Dshi_0496 0.90 +0.5 482,540 + -1.3 482,558 + +0.5 482,564 + -0.2 482,564 + -0.8 482,564 + +0.1 482,606 - +0.4 482,612 - +0.2 482,637 + -0.5 482,689 - +0.7 482,695 - -0.4 482,755 - -0.4 482,769 - -0.2 482,776 + +0.5 482,776 + +0.7 482,776 + -0.0 482,776 - -0.5 482,784 - +0.6 482,784 - +0.3 482,784 - -0.5 482,816 + -0.4 482,824 - -0.9 482,859 - +0.2 482,871 + +1.1 482,879 - +0.5 482,895 - -0.8 482,900 - Dshi_0497 0.11 +0.3 482,922 - Dshi_0497 0.14 +0.0 482,934 + Dshi_0497 0.15 -0.1 482,939 + Dshi_0497 0.16 -1.7 482,961 - Dshi_0497 0.19 -0.3 482,996 - Dshi_0497 0.24 -0.9 483,001 - Dshi_0497 0.24 +0.4 483,059 + Dshi_0497 0.32 +0.3 483,094 - Dshi_0497 0.37 +0.2 483,176 - Dshi_0497 0.48 -1.1 483,205 + Dshi_0497 0.52 +0.6 483,226 + Dshi_0497 0.55 -1.0 483,274 + Dshi_0497 0.61 +0.2 483,344 + Dshi_0497 0.71 -0.2 483,344 + Dshi_0497 0.71 +0.7 483,344 - Dshi_0497 0.71 -1.0 483,395 + Dshi_0497 0.78 +0.1 483,396 - Dshi_0497 0.78 -0.3 483,398 + Dshi_0497 0.78 -0.9 483,403 + Dshi_0497 0.79 -1.2 483,424 - Dshi_0497 0.82 -0.3 483,429 - Dshi_0497 0.83 +0.4 483,436 + Dshi_0497 0.84 -0.7 483,436 - Dshi_0497 0.84 -0.4 483,545 - -0.7 483,569 + -0.1 483,620 + Dshi_0498 0.12 +0.4 483,628 - Dshi_0498 0.13 +1.0 483,628 - Dshi_0498 0.13 -0.5
Or see this region's nucleotide sequence