Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0226 and Dshi_0227 overlap by 4 nucleotides Dshi_0227 and Dshi_0228 are separated by 154 nucleotides Dshi_0228 and Dshi_0229 are separated by 4 nucleotides Dshi_0229 and Dshi_0230 are separated by 346 nucleotides Dshi_0230 and Dshi_0231 are separated by 12 nucleotides
Dshi_0226: Dshi_0226 - protein of unknown function DUF1244 (RefSeq), at 224,310 to 224,642
_0226
Dshi_0227: Dshi_0227 - N-formylglutamate amidohydrolase (RefSeq), at 224,639 to 225,388
_0227
Dshi_0228: Dshi_0228 - pyruvate kinase (RefSeq), at 225,543 to 226,991
_0228
Dshi_0229: Dshi_0229 - hypothetical protein (RefSeq), at 226,996 to 227,220
_0229
Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767
_0230
Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145
_0231
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.586 kb on + strand, within Dshi_0226 at 224.691 kb on + strand at 224.817 kb on + strand, within Dshi_0227 at 224.865 kb on + strand, within Dshi_0227 at 224.866 kb on - strand, within Dshi_0227 at 224.866 kb on - strand, within Dshi_0227 at 224.932 kb on - strand, within Dshi_0227 at 224.982 kb on + strand, within Dshi_0227 at 224.990 kb on - strand, within Dshi_0227 at 225.005 kb on + strand, within Dshi_0227 at 225.027 kb on + strand, within Dshi_0227 at 225.066 kb on - strand, within Dshi_0227 at 225.110 kb on - strand, within Dshi_0227 at 225.229 kb on + strand, within Dshi_0227 at 225.232 kb on - strand, within Dshi_0227 at 225.237 kb on - strand, within Dshi_0227 at 225.293 kb on - strand, within Dshi_0227 at 225.341 kb on + strand at 225.349 kb on - strand at 225.435 kb on + strand at 225.439 kb on + strand at 225.439 kb on + strand at 225.447 kb on - strand at 225.447 kb on - strand at 225.447 kb on - strand at 225.447 kb on - strand at 225.447 kb on - strand at 225.452 kb on - strand at 226.496 kb on + strand, within Dshi_0228 at 226.889 kb on - strand at 227.010 kb on + strand at 227.016 kb on + strand at 227.209 kb on + strand at 227.217 kb on - strand at 227.242 kb on + strand at 227.274 kb on + strand at 227.326 kb on - strand at 227.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 224,586 + Dshi_0226 0.83 -0.2 224,691 + +0.0 224,817 + Dshi_0227 0.24 -0.2 224,865 + Dshi_0227 0.30 +0.3 224,866 - Dshi_0227 0.30 -1.2 224,866 - Dshi_0227 0.30 +1.2 224,932 - Dshi_0227 0.39 -0.0 224,982 + Dshi_0227 0.46 +0.2 224,990 - Dshi_0227 0.47 +0.1 225,005 + Dshi_0227 0.49 +0.3 225,027 + Dshi_0227 0.52 +0.5 225,066 - Dshi_0227 0.57 -0.4 225,110 - Dshi_0227 0.63 +0.3 225,229 + Dshi_0227 0.79 +0.5 225,232 - Dshi_0227 0.79 -0.2 225,237 - Dshi_0227 0.80 -0.5 225,293 - Dshi_0227 0.87 -0.3 225,341 + +0.7 225,349 - -0.7 225,435 + +0.6 225,439 + +0.4 225,439 + -0.0 225,447 - -0.1 225,447 - +0.3 225,447 - -0.6 225,447 - +0.1 225,447 - -0.4 225,452 - -0.7 226,496 + Dshi_0228 0.66 +0.1 226,889 - +1.1 227,010 + -0.4 227,016 + -0.1 227,209 + -0.6 227,217 - -0.3 227,242 + -0.4 227,274 + +1.5 227,326 - +1.2 227,467 - +0.1
Or see this region's nucleotide sequence