Strain Fitness in Shewanella oneidensis MR-1 around SO_A0045

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
32,646	+		SOA0044	0.13	+1.9
32,664	-		SOA0044	0.15	-0.1
32,665	-		SOA0044	0.15	+0.0
32,697	-		SOA0044	0.18	+1.0
32,713	-		SOA0044	0.19	+0.7
32,728	-		SOA0044	0.21	+2.6
32,737	+		SOA0044	0.21	+1.1
32,737	+		SOA0044	0.21	-0.6
32,740	+		SOA0044	0.22	-1.0
32,745	-		SOA0044	0.22	-0.3
32,745	-		SOA0044	0.22	-0.3
32,757	+		SOA0044	0.23	-2.1
32,765	-		SOA0044	0.24	-0.8
32,767	+		SOA0044	0.24	+0.2
32,767	+		SOA0044	0.24	-0.3
32,767	+		SOA0044	0.24	+0.2
32,767	+		SOA0044	0.24	+0.1
32,767	+		SOA0044	0.24	+0.3
32,767	+		SOA0044	0.24	-0.2
32,767	+		SOA0044	0.24	+0.7
32,767	+		SOA0044	0.24	+1.2
32,767	+		SOA0044	0.24	+0.0
32,767	+		SOA0044	0.24	+0.9
32,767	+		SOA0044	0.24	-0.6
32,767	+		SOA0044	0.24	-1.4
32,767	+		SOA0044	0.24	-1.4
32,767	+		SOA0044	0.24	+0.6
32,767	+		SOA0044	0.24	+1.2
32,767	+		SOA0044	0.24	+0.4
32,767	+		SOA0044	0.24	+2.2
32,767	+		SOA0044	0.24	-0.8
32,775	-		SOA0044	0.25	+1.4
32,775	-		SOA0044	0.25	-0.4
32,775	-		SOA0044	0.25	+0.9
32,775	-		SOA0044	0.25	-0.7
32,775	-		SOA0044	0.25	-1.0
32,775	-		SOA0044	0.25	+0.4
32,775	-		SOA0044	0.25	-1.7
32,775	-		SOA0044	0.25	-1.0
32,775	-		SOA0044	0.25	-0.4
32,872	+		SOA0044	0.33	+2.3
32,872	+		SOA0044	0.33	+1.1
32,877	+		SOA0044	0.34	+0.3
32,880	-		SOA0044	0.34	+0.3
32,885	-		SOA0044	0.34	+1.2
32,885	-		SOA0044	0.34	-1.4
32,885	-		SOA0044	0.34	-0.4
32,910	+		SOA0044	0.37	+0.6
32,918	-		SOA0044	0.37	-0.2
32,918	-		SOA0044	0.37	+1.6
32,924	+		SOA0044	0.38	+0.6
32,929	+		SOA0044	0.38	-0.9
32,954	+		SOA0044	0.40	+0.0
32,955	+		SOA0044	0.41	-0.5
33,012	+		SOA0044	0.46	+0.8
33,017	+		SOA0044	0.46	+0.7
33,025	-		SOA0044	0.47	-1.2
33,035	-		SOA0044	0.48	+0.6
33,046	-		SOA0044	0.49	+0.2
33,049	+		SOA0044	0.49	-0.5
33,057	-		SOA0044	0.50	+1.2
33,059	+		SOA0044	0.50	-1.0
33,059	+		SOA0044	0.50	+1.7
33,059	+		SOA0044	0.50	+0.0
33,064	+		SOA0044	0.50	-1.6
33,064	+		SOA0044	0.50	-0.0
33,067	-		SOA0044	0.50	+4.8
33,067	-		SOA0044	0.50	-0.2
33,067	-		SOA0044	0.50	+1.0
33,110	+		SOA0044	0.54	-0.7
33,128	-		SOA0044	0.56	-0.2
33,128	-		SOA0044	0.56	+0.7
33,162	+		SOA0044	0.59	-1.0
33,170	-		SOA0044	0.60	+0.5
33,170	-		SOA0044	0.60	+0.1
33,219	-		SOA0044	0.64	-0.6
33,265	-		SOA0044	0.68	-1.6
33,358	+		SOA0044	0.76	+0.2
33,450	+		SOA0044	0.84	+1.7
33,450	+		SOA0044	0.84	-0.4
33,453	-		SOA0044	0.85	+0.4
33,458	-		SOA0044	0.85	+0.8
33,464	-		SOA0044	0.86	-0.9
33,530	-				+0.6
33,537	+				-0.3
33,545	-				+0.2
33,547	+				+0.9
33,547	+				+0.7
33,655	-				-0.2
33,658	+				-0.6
33,666	-				+1.2
33,679	+				-0.4
33,679	+				+0.5
33,687	-				-0.7
33,687	-				+0.9
33,688	-				-1.0
33,689	+				-1.1
33,689	+				+0.6
33,689	+				-0.5
33,689	+				+0.3
33,697	-				-1.4
33,697	-				+2.6
33,697	-				-1.0
33,705	+				+0.6
33,705	+				-1.9
33,705	+				-1.1
33,705	+				-0.8
33,713	-				-1.4
33,713	-				-2.2
33,713	-				+1.0
33,724	+				+0.1
33,730	-				+1.3
33,786	+		SO_A0045	0.12	+0.5
33,827	+		SO_A0045	0.15	+1.1
33,850	+		SO_A0045	0.17	+1.7
33,850	+		SO_A0045	0.17	+0.8
33,850	+		SO_A0045	0.17	+2.2
33,853	-		SO_A0045	0.17	+0.4
33,858	-		SO_A0045	0.17	-1.0
33,858	-		SO_A0045	0.17	+1.2
33,858	-		SO_A0045	0.17	+0.8
33,858	-		SO_A0045	0.17	-0.2
33,874	+		SO_A0045	0.18	-0.1
33,891	+		SO_A0045	0.20	-0.3
33,903	+		SO_A0045	0.20	-0.4
33,903	+		SO_A0045	0.20	+0.5
33,935	-		SO_A0045	0.23	+0.3
33,960	-		SO_A0045	0.25	+1.6
33,961	-		SO_A0045	0.25	+2.6
33,977	+		SO_A0045	0.26	+1.5
33,977	+		SO_A0045	0.26	+1.0
33,985	-		SO_A0045	0.26	-1.3
33,985	-		SO_A0045	0.26	-0.8
33,985	-		SO_A0045	0.26	+0.5
33,985	-		SO_A0045	0.26	+1.6
33,985	-		SO_A0045	0.26	-0.1
33,986	+		SO_A0045	0.26	-1.0
33,994	-		SO_A0045	0.27	+1.9
34,042	+		SO_A0045	0.31	+0.6
34,042	+		SO_A0045	0.31	-0.8
34,050	-		SO_A0045	0.31	+0.3
34,062	+		SO_A0045	0.32	+0.1
34,070	-		SO_A0045	0.33	-1.0
34,070	-		SO_A0045	0.33	-0.8
34,072	+		SO_A0045	0.33	+0.6
34,080	-		SO_A0045	0.33	+1.6
34,095	-		SO_A0045	0.34	-0.0
34,100	+		SO_A0045	0.35	-0.7
34,102	+		SO_A0045	0.35	+1.1
34,102	+		SO_A0045	0.35	-1.0
34,102	+		SO_A0045	0.35	-1.7
34,108	+		SO_A0045	0.35	-0.4
34,108	+		SO_A0045	0.35	+0.8
34,108	+		SO_A0045	0.35	+0.4
34,110	-		SO_A0045	0.36	+0.8
34,116	-		SO_A0045	0.36	-0.2
34,116	-		SO_A0045	0.36	+0.9
34,116	-		SO_A0045	0.36	+0.6
34,116	-		SO_A0045	0.36	-0.1
34,139	+		SO_A0045	0.38	+0.4
34,147	-		SO_A0045	0.38	+0.5
34,154	-		SO_A0045	0.39	-0.2
34,213	+		SO_A0045	0.43	-0.9
34,213	+		SO_A0045	0.43	-1.0
34,245	-		SO_A0045	0.45	+0.6
34,245	-		SO_A0045	0.45	+0.8
34,286	+		SO_A0045	0.48	+1.6
34,289	-		SO_A0045	0.49	+1.2
34,293	+		SO_A0045	0.49	+2.1
34,374	+		SO_A0045	0.55	+0.2
34,462	+		SO_A0045	0.61	-0.3
34,462	+		SO_A0045	0.61	+0.6
34,462	+		SO_A0045	0.61	+1.4
34,462	+		SO_A0045	0.61	-1.5
34,462	+		SO_A0045	0.61	-0.4
34,462	+		SO_A0045	0.61	+0.2
34,468	+		SO_A0045	0.62	+0.0
34,468	+		SO_A0045	0.62	+0.8
34,468	+		SO_A0045	0.62	+0.3
34,470	-		SO_A0045	0.62	-0.2
34,473	+		SO_A0045	0.62	-0.4
34,476	-		SO_A0045	0.62	+0.3
34,476	-		SO_A0045	0.62	+1.6
34,501	-		SO_A0045	0.64	-1.0
34,502	+		SO_A0045	0.64	+2.3
34,512	+		SO_A0045	0.65	+1.6
34,530	+		SO_A0045	0.66	-1.4
34,530	+		SO_A0045	0.66	+1.0
34,530	+		SO_A0045	0.66	-0.6
34,530	+		SO_A0045	0.66	-0.5
34,538	-		SO_A0045	0.67	+1.6
34,538	-		SO_A0045	0.67	+0.6
34,583	+		SO_A0045	0.70	+1.6
34,607	+		SO_A0045	0.72	+1.2
34,701	+		SO_A0045	0.79	+0.0
34,701	+		SO_A0045	0.79	-3.0
34,706	+		SO_A0045	0.79	+2.4
34,706	+		SO_A0045	0.79	-1.0
34,709	-		SO_A0045	0.79	+0.5
34,713	+		SO_A0045	0.80	+0.3
34,713	+		SO_A0045	0.80	+0.0
34,713	+		SO_A0045	0.80	-0.3
34,713	+		SO_A0045	0.80	-1.1
34,714	-		SO_A0045	0.80	-0.2
34,721	-		SO_A0045	0.80	+1.6
34,721	-		SO_A0045	0.80	-0.7
34,723	+		SO_A0045	0.80	+0.8
34,733	+		SO_A0045	0.81	+0.2
34,764	-		SO_A0045	0.83	-0.4
34,764	-		SO_A0045	0.83	+0.0
34,765	+		SO_A0045	0.83	-0.2
34,771	+		SO_A0045	0.84	+0.9
34,772	-		SO_A0045	0.84	-1.2
34,773	-		SO_A0045	0.84	+0.6
34,774	-		SO_A0045	0.84	-0.7
34,788	-		SO_A0045	0.85	+1.3
34,798	-		SO_A0045	0.86	+0.7
34,858	+				-1.6
34,864	+				+0.2
34,864	+				+2.0
34,864	+				+1.6
34,864	+				+0.6
34,872	-				-1.0
34,872	-				-0.4
34,872	-				-0.2
34,872	-				+2.4
34,872	-				-0.2
34,899	-				+2.2
34,899	-				-2.3
34,899	-				+0.2
34,899	-				-0.5
34,928	+				-0.4
34,928	+				-1.6
34,951	-				+0.6
34,951	-				-0.2
34,958	-				+2.6
35,020	-				+1.2
35,029	+				+0.7
35,029	+				+0.7
35,029	+				+0.9
35,031	-				-0.5
35,039	-				+0.8
35,048	+				+2.8
35,070	-				-0.7
35,076	-				+1.1
35,078	+				+2.6
35,082	+				+0.6
35,090	-				-0.0
35,095	+				+0.6
35,103	-				+1.9
35,112	+				+0.6
35,112	+				-0.3
35,112	+				+0.1
35,120	-				-0.1
35,120	-				-0.3
35,138	+				+0.3
35,141	-				-0.4
35,143	+				+0.0
35,143	+				+0.6
35,143	+				-0.3
35,151	-		SOA0046	0.16	-0.4
35,151	-		SOA0046	0.16	+0.1
35,151	-		SOA0046	0.16	+0.8
35,151	-		SOA0046	0.16	+1.5
35,152	+		SOA0046	0.17	-0.5
35,159	+		SOA0046	0.24	-2.1
35,162	+		SOA0046	0.26	+0.3
35,169	+		SOA0046	0.33	-0.8
35,170	+		SOA0046	0.34	+0.3
35,170	+		SOA0046	0.34	-0.5
35,176	+		SOA0046	0.40	-0.5
35,176	+		SOA0046	0.40	+1.0
35,177	+		SOA0046	0.41	-1.5
35,177	+		SOA0046	0.41	+1.2
35,177	+		SOA0046	0.41	-0.7
35,177	+		SOA0046	0.41	+1.5
35,177	+		SOA0046	0.41	+1.9
35,177	+		SOA0046	0.41	+0.4
35,177	-		SOA0046	0.41	+2.2
35,178	-		SOA0046	0.42	+0.6
35,178	-		SOA0046	0.42	+2.2
35,178	-		SOA0046	0.42	+0.5
35,184	-		SOA0046	0.48	+1.1
35,184	-		SOA0046	0.48	+0.9
35,184	-		SOA0046	0.48	-1.7
35,185	-		SOA0046	0.49	+0.1
35,205	+		SOA0046	0.69	+0.6
35,233	-				+1.1
35,238	+				+0.8
35,248	+				-0.3
35,248	+				+0.8
35,248	+				-0.7
35,248	+				+2.3
35,256	-				+0.0
35,256	-				+2.0
35,258	+				-0.2
35,258	+				+0.9
35,258	+				-0.9
35,258	+				-0.1
35,261	-				-0.7
35,263	+				+1.1
35,263	+				-0.7
35,263	+				+1.2
35,263	+				-0.4
35,263	+				-0.2
35,266	-				-0.3
35,266	-				-2.0
35,266	-				-0.3
35,266	-				+0.0
35,266	-				+0.3
35,266	-				-1.6
35,266	-				+1.5
35,266	-				+0.3
35,271	-				+1.6
35,271	-				+1.0
35,271	-				+0.0
35,271	-				+0.6
35,271	-				+0.5
35,279	+				+0.1
35,279	+				-0.1
35,295	+				-0.6
35,303	-				-0.4
35,308	+				-1.0
35,309	+				+0.3
35,309	+				+1.1
35,357	-				+2.3
35,357	-				+0.4
35,357	-				+2.2
35,357	-				+0.7
35,357	-				+0.0
35,357	-				-0.7
35,359	-				-0.3
35,396	+				+1.3
35,396	+				+0.2
35,404	-				+0.5
35,404	-				-1.6
35,404	-				-0.4
35,404	-				+0.9
35,434	+				-0.2
35,442	-				-1.1
35,474	+		SO_A0047	0.13	-1.0
35,478	-		SO_A0047	0.14	+1.0
35,481	+		SO_A0047	0.15	+0.1
35,497	-		SO_A0047	0.20	-0.5
35,497	-		SO_A0047	0.20	+1.7
35,497	-		SO_A0047	0.20	-0.5
35,497	-		SO_A0047	0.20	-3.0
35,503	-		SO_A0047	0.22	+0.6
35,504	+		SO_A0047	0.22	-0.6
35,517	+		SO_A0047	0.26	+1.5
35,517	+		SO_A0047	0.26	+0.8
35,530	-		SO_A0047	0.30	+1.1
35,532	+		SO_A0047	0.31	+1.1
35,532	+		SO_A0047	0.31	-0.4
35,532	+		SO_A0047	0.31	-0.4
35,532	+		SO_A0047	0.31	-0.2
35,540	-		SO_A0047	0.33	-0.7
35,540	-		SO_A0047	0.33	+0.8
35,540	-		SO_A0047	0.33	+0.9
35,540	-		SO_A0047	0.33	+0.5
35,540	-		SO_A0047	0.33	+0.5
35,540	-		SO_A0047	0.33	-0.5
35,544	+		SO_A0047	0.34	+0.1
35,550	+		SO_A0047	0.36	-0.1
35,550	+		SO_A0047	0.36	-1.9
35,557	-		SO_A0047	0.38	+0.0
35,619	+		SO_A0047	0.57	+1.3
35,626	+		SO_A0047	0.59	+0.2
35,628	+		SO_A0047	0.59	+4.8
35,634	-		SO_A0047	0.61	-0.7
35,636	-		SO_A0047	0.62	-0.4
35,648	-		SO_A0047	0.65	-0.5
35,655	+		SO_A0047	0.68	-0.6
35,665	-		SO_A0047	0.71	+1.6
35,665	-		SO_A0047	0.71	+0.3
35,685	+		SO_A0047	0.77	-1.0
35,693	-		SO_A0047	0.79	+0.5
35,693	-		SO_A0047	0.79	+0.0
35,693	-		SO_A0047	0.79	+1.0
35,707	-		SO_A0047	0.83	+0.4
35,714	+		SO_A0047	0.85	-0.4
35,715	+		SO_A0047	0.86	-0.6
35,715	+		SO_A0047	0.86	+1.0
35,722	-		SO_A0047	0.88	+0.9
35,722	-		SO_A0047	0.88	+0.4
35,723	-		SO_A0047	0.88	+1.3
35,723	-		SO_A0047	0.88	+1.0
35,723	-		SO_A0047	0.88	+0.1
35,755	-				+0.0
35,784	+				+1.6
35,784	+				+0.7
35,784	+				+0.0
35,784	+				-0.1
35,792	-				-0.4
35,792	-				-1.7
35,792	-				+1.0
35,792	-				+1.0
35,792	-				-0.1
35,793	+				-1.7
35,800	+				+0.9
35,802	-				-1.4
35,802	-				+0.0
35,803	-				+0.8
35,808	-				+0.0
35,808	-				+1.3
35,808	-				-0.4
35,812	-				+0.8
35,838	-				-0.4
35,840	+				+0.5
35,845	+				-1.8
35,845	+				-1.4
35,845	+				-0.4
35,845	+				-0.7
35,845	+				+0.4
35,848	-				+2.6
35,853	-				-0.3
35,853	-				-0.4
35,853	-				+0.8
35,853	-				-0.4
35,853	-				+0.2
35,853	-				+1.1
35,853	-				+1.6
35,853	-				-1.2
35,853	-				-0.5
35,853	-				+0.9
35,853	-				+0.4
35,853	-				-0.2
35,853	-				+0.6
35,853	-				-0.2
35,873	+				-1.8
35,885	-				-0.3
35,887	+				+1.6
35,887	+				-1.2
35,887	+				+1.1
35,887	+				+0.9
35,887	+				+0.3
35,887	+				-0.4
35,887	+				-0.0
35,887	+				+0.3
35,887	+				-0.9
35,887	+				-1.4
35,887	+				-0.7
35,890	-				+0.6
35,890	-				+0.2
35,890	-				+1.6
35,892	+				+1.2
35,892	+				-0.1
35,892	+				-1.2
35,892	+				+0.5
35,892	+				-2.7
35,892	+				-1.0
35,892	+				+0.6
35,892	+				+0.6
35,895	-				+0.6
35,895	-				+1.1
35,895	-				+0.4
35,895	-				-0.1
35,895	-				+1.0
35,895	-				+0.0
35,895	-				-1.2
35,895	-				-1.0
35,895	-				+0.2
35,895	-				-0.1
35,895	-				-0.7
35,895	-				-0.3
35,895	-				+0.6
35,895	-				+1.2
35,895	-				+0.6
35,895	-				-0.9
35,895	-				-1.0
35,895	-				-0.4
35,895	-				-0.7
35,895	-				+1.2
35,895	-				+0.4
35,897	+				-0.4
35,900	-				-1.6
35,900	-				-0.7
35,900	-				+1.4
35,900	-				-0.1
35,900	-				+0.7
35,900	-				+0.4
35,900	-				+0.1
35,900	-				+1.2
35,900	-				+1.6
35,905	-				+0.3
35,907	+				+1.6
35,916	-				+0.2
35,964	+				+0.8
35,972	-				-0.7
35,977	-				+1.6