Strain Fitness in Shewanella oneidensis MR-1 around SO4513

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
4,704,626	-		SO4511	0.61	+1.0
4,704,626	-		SO4511	0.61	+0.5
4,704,651	-		SO4511	0.63	-0.1
4,704,679	+		SO4511	0.66	-0.3
4,704,776	-		SO4511	0.76	-0.7
4,704,798	+		SO4511	0.78	+0.8
4,704,798	+		SO4511	0.78	+1.6
4,704,798	+		SO4511	0.78	+1.3
4,704,798	+		SO4511	0.78	-0.3
4,704,803	+		SO4511	0.78	+1.7
4,704,803	+		SO4511	0.78	+0.2
4,704,806	-		SO4511	0.78	+1.0
4,704,806	-		SO4511	0.78	+0.9
4,704,811	-		SO4511	0.79	+0.1
4,704,826	-		SO4511	0.80	+2.3
4,704,842	+		SO4511	0.82	-0.5
4,704,879	-		SO4511	0.86	+2.1
4,704,925	-				+0.5
4,704,934	-				-0.6
4,705,048	+				-0.5
4,705,280	+				+0.5
4,705,280	+				-0.3
4,705,419	-				+0.4
4,705,509	+		SO4512	0.51	+1.4
4,705,518	+		SO4512	0.55	-1.0
4,705,545	-		SO4512	0.69	+1.4
4,705,547	+		SO4512	0.70	-0.3
4,705,547	+		SO4512	0.70	+0.0
4,705,547	+		SO4512	0.70	+0.7
4,705,547	+		SO4512	0.70	-0.6
4,705,547	+		SO4512	0.70	+1.0
4,705,547	+		SO4512	0.70	-1.2
4,705,547	+		SO4512	0.70	-2.7
4,705,547	+		SO4512	0.70	-0.0
4,705,547	+		SO4512	0.70	+2.3
4,705,547	+		SO4512	0.70	+0.5
4,705,547	+		SO4512	0.70	-1.9
4,705,555	-		SO4512	0.74	-0.2
4,705,555	-		SO4512	0.74	+1.2
4,705,555	-		SO4512	0.74	+1.5
4,705,574	+		SO4512	0.83	+0.3
4,705,641	+				-1.4
4,705,687	-				+0.5
4,705,752	+				+1.3
4,705,785	-				+1.5
4,705,785	-				-1.7
4,705,853	-				-2.2
4,705,873	-				+0.1
4,705,886	+				-1.0
4,705,886	+				-0.6
4,705,886	+				-0.0
4,705,886	+				-1.3
4,705,886	+				-1.3
4,705,886	+				-0.2
4,705,887	+				+0.4
4,705,894	-				+0.1
4,705,894	-				+0.9
4,705,894	-				-0.9
4,705,894	-				-0.1
4,705,894	-				+0.9
4,705,894	-				-0.6
4,705,894	-				+0.1
4,705,894	-				+0.3
4,705,894	-				-0.3
4,705,940	-		SO4513	0.11	+1.3
4,705,940	-		SO4513	0.11	+0.9
4,705,949	-		SO4513	0.11	+0.8
4,706,109	-		SO4513	0.17	-0.6
4,706,112	+		SO4513	0.17	+0.3
4,706,119	+		SO4513	0.17	+1.6
4,706,134	-		SO4513	0.18	-0.7
4,706,144	-		SO4513	0.18	+0.9
4,706,247	-		SO4513	0.22	+1.3
4,706,262	+		SO4513	0.22	-3.2
4,706,304	+		SO4513	0.24	-0.9
4,706,304	+		SO4513	0.24	-1.6
4,706,313	-		SO4513	0.24	+0.3
4,706,519	+		SO4513	0.31	+0.6
4,706,527	-		SO4513	0.32	-2.8
4,706,642	+		SO4513	0.36	-1.6
4,706,642	+		SO4513	0.36	-0.2
4,706,671	+		SO4513	0.37	-0.3
4,706,797	+		SO4513	0.41	-1.2
4,706,847	+		SO4513	0.43	-0.3
4,706,852	+		SO4513	0.43	+0.1
4,706,860	-		SO4513	0.43	+0.1
4,706,876	+		SO4513	0.44	-0.1
4,706,880	+		SO4513	0.44	-1.6
4,706,884	-		SO4513	0.44	+2.2
4,706,893	-		SO4513	0.44	-0.0
4,706,942	-		SO4513	0.46	+0.7
4,706,988	+		SO4513	0.48	-1.9
4,707,047	+		SO4513	0.50	+0.1
4,707,081	-		SO4513	0.51	-0.5
4,707,244	-		SO4513	0.57	-0.0
4,707,246	+		SO4513	0.57	+0.0
4,707,246	+		SO4513	0.57	-1.1
4,707,339	+		SO4513	0.60	+0.0
4,707,437	-		SO4513	0.64	-0.4
4,707,450	+		SO4513	0.64	-0.4
4,707,458	-		SO4513	0.64	+0.9
4,707,458	-		SO4513	0.64	+0.3
4,707,458	-		SO4513	0.64	-0.2
4,707,458	-		SO4513	0.64	-1.9
4,707,458	-		SO4513	0.64	-0.2
4,707,541	-		SO4513	0.67	+1.2
4,707,541	-		SO4513	0.67	+1.0
4,707,547	-		SO4513	0.67	-0.0
4,707,553	-		SO4513	0.68	+0.5
4,707,580	-		SO4513	0.69	+0.3
4,707,609	+		SO4513	0.70	-0.8
4,707,609	+		SO4513	0.70	+0.1
4,707,761	-		SO4513	0.75	+0.0
4,707,870	+		SO4513	0.79	-0.5
4,707,878	-		SO4513	0.79	-1.6
4,707,915	-		SO4513	0.80	-0.3
4,707,923	+		SO4513	0.81	-0.6
4,707,923	+		SO4513	0.81	-0.6
4,707,923	+		SO4513	0.81	-0.3
4,707,932	+		SO4513	0.81	-0.7
4,707,932	+		SO4513	0.81	-0.6
4,708,027	+		SO4513	0.84	-1.0
4,708,027	+		SO4513	0.84	-0.5
4,708,027	+		SO4513	0.84	-0.5
4,708,027	+		SO4513	0.84	-2.6
4,708,035	-		SO4513	0.84	+0.3
4,708,035	-		SO4513	0.84	-2.0
4,708,088	-		SO4513	0.86	-1.8
4,708,131	+		SO4513	0.88	-1.8
4,708,131	+		SO4513	0.88	+1.2
4,708,179	-		SO4513	0.90	-0.1
4,708,241	-				+0.2
4,708,261	+				+4.2
4,708,264	-				-0.2
4,708,296	+				-1.0
4,708,304	-				-2.2
4,708,304	-				+0.2
4,708,362	+				-0.1
4,708,400	+				+0.5
4,708,405	+				-0.2
4,708,408	-				-0.4
4,708,448	+				+1.7
4,708,491	-				+0.2
4,708,491	-				-0.3
4,708,534	+				+0.9
4,708,562	+				+0.7
4,708,685	+	fdhB-2	SO4514	0.31	+0.1
4,708,693	-	fdhB-2	SO4514	0.33	+0.6
4,708,753	-	fdhB-2	SO4514	0.43	+0.8
4,708,880	-	fdhB-2	SO4514	0.65	-1.7
4,708,954	+	fdhB-2	SO4514	0.78	-1.2
4,708,962	-	fdhB-2	SO4514	0.80	+0.6
4,708,962	-	fdhB-2	SO4514	0.80	-1.3
4,708,962	-	fdhB-2	SO4514	0.80	-0.3
4,708,964	+	fdhB-2	SO4514	0.80	-0.6
4,708,964	+	fdhB-2	SO4514	0.80	+0.9
4,708,972	-	fdhB-2	SO4514	0.82	-0.5
4,709,081	+				-1.5
4,709,109	-				+1.2
4,709,177	+				+0.7
4,709,181	-				+1.2
4,709,185	-				+0.6
4,709,185	-				-0.8
4,709,192	+				-0.3
4,709,197	+				-0.0
4,709,234	-				+0.7
4,709,276	+		SO4515	0.12	-0.6
4,709,278	+		SO4515	0.13	-1.4
4,709,278	+		SO4515	0.13	+0.3
4,709,278	+		SO4515	0.13	-1.1
4,709,318	-		SO4515	0.17	-1.1
4,709,343	+		SO4515	0.19	+0.4
4,709,343	+		SO4515	0.19	-0.4
4,709,343	+		SO4515	0.19	+0.4
4,709,343	-		SO4515	0.19	+0.1
4,709,351	-		SO4515	0.20	-1.2
4,709,358	+		SO4515	0.21	-1.4
4,709,358	+		SO4515	0.21	-0.3
4,709,379	+		SO4515	0.23	+0.1
4,709,455	+		SO4515	0.31	+0.7