Strain Fitness in Shewanella oneidensis MR-1 around SO4068

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
4,220,458	-		SO4066	0.69	-3.5
4,220,483	+		SO4066	0.72	-3.2
4,220,483	+		SO4066	0.72	-3.3
4,220,632	+		SO4066	0.85	-1.5
4,220,640	-		SO4066	0.86	-5.4
4,220,643	+		SO4066	0.86	-1.3
4,220,685	+		SO4066	0.90	-2.4
4,220,685	+		SO4066	0.90	-2.8
4,220,687	-				-4.8
4,220,744	-				-4.7
4,220,777	+				-3.2
4,220,785	-				-2.9
4,220,860	+				-3.0
4,220,907	+				+0.1
4,220,925	-				+0.9
4,220,962	-				+0.1
4,221,181	+				-1.1
4,221,186	+				-0.2
4,221,186	+				+0.8
4,221,190	+				-0.2
4,221,193	+				-1.2
4,221,193	+				+0.6
4,221,193	+				-0.9
4,221,198	+				+1.1
4,221,198	+				-0.4
4,221,206	-				-0.3
4,221,206	-				-0.6
4,221,211	+				+0.5
4,221,214	-				+1.3
4,221,242	+				-0.1
4,221,242	+				+0.8
4,221,242	+				-1.1
4,221,250	-				+0.6
4,221,250	-				+0.1
4,221,262	-				-0.7
4,221,334	-				-2.8
4,221,368	+				-1.9
4,221,368	+				+0.9
4,221,372	+				-0.3
4,221,372	+				-0.3
4,221,372	+				-0.3
4,221,372	+				+0.1
4,221,372	+				-0.8
4,221,372	+				+0.9
4,221,372	+				+0.5
4,221,372	+				-0.3
4,221,372	+				-0.2
4,221,376	-				+0.9
4,221,376	-				-0.4
4,221,377	+				-0.3
4,221,380	-				+1.6
4,221,380	-				-0.1
4,221,454	-				+0.5
4,221,481	-				-0.3
4,221,481	-				+0.5
4,221,486	+				-2.5
4,221,486	+				+1.8
4,221,492	+				-2.3
4,221,492	+				+0.5
4,221,494	-				-0.9
4,221,494	-				-0.9
4,221,494	-				+1.5
4,221,494	-				+0.3
4,221,496	-				+0.1
4,221,500	-				+0.2
4,221,514	-				+1.3
4,221,514	-				+0.7
4,221,514	-				-0.1
4,221,514	-				+0.5
4,221,514	-				+0.3
4,221,514	-				-1.1
4,221,537	+				-0.3
4,221,537	+				+1.1
4,221,557	+				+1.5
4,221,594	-				-1.3
4,221,598	-				+0.1
4,221,603	+				+1.7
4,221,605	+				+0.2
4,221,605	+				+1.0
4,221,605	+				+0.6
4,221,605	+				+1.1
4,221,605	+				+0.6
4,221,605	+				+0.7
4,221,613	-				+0.2
4,221,613	-				-0.7
4,221,613	-				-1.9
4,221,613	-				+1.1
4,221,613	-				+0.6
4,221,613	-				+0.7
4,221,613	-				-0.0
4,221,622	+				+0.7
4,221,626	+				+0.8
4,221,629	-				+0.7
4,221,639	+				-0.5
4,221,640	+				-0.9
4,221,640	+				-0.8
4,221,640	+				+0.9
4,221,644	+				-0.5
4,221,647	-				-0.1
4,221,647	-				+0.2
4,221,647	-				+0.5
4,221,657	-		SO4068	0.10	-2.0
4,221,664	+		SO4068	0.10	+0.9
4,221,672	-		SO4068	0.11	+0.3
4,221,707	+		SO4068	0.12	-0.6
4,221,707	+		SO4068	0.12	+1.1
4,221,707	+		SO4068	0.12	+0.7
4,221,707	+		SO4068	0.12	+1.2
4,221,707	+		SO4068	0.12	-1.5
4,221,707	+		SO4068	0.12	-0.1
4,221,707	+		SO4068	0.12	+1.3
4,221,707	+		SO4068	0.12	+0.3
4,221,707	+		SO4068	0.12	-1.0
4,221,707	+		SO4068	0.12	+0.1
4,221,707	+		SO4068	0.12	-0.0
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	-0.3
4,221,707	+		SO4068	0.12	-0.0
4,221,707	+		SO4068	0.12	+0.4
4,221,707	+		SO4068	0.12	-0.9
4,221,707	+		SO4068	0.12	+0.8
4,221,707	+		SO4068	0.12	-0.8
4,221,707	+		SO4068	0.12	-0.4
4,221,707	+		SO4068	0.12	+0.2
4,221,707	+		SO4068	0.12	+0.2
4,221,707	+		SO4068	0.12	-0.4
4,221,709	+		SO4068	0.13	+0.3
4,221,715	-		SO4068	0.13	+0.2
4,221,715	-		SO4068	0.13	+2.6
4,221,715	-		SO4068	0.13	+0.3
4,221,715	-		SO4068	0.13	+3.1
4,221,715	-		SO4068	0.13	+0.6
4,221,715	-		SO4068	0.13	+0.6
4,221,715	-		SO4068	0.13	-0.8
4,221,715	-		SO4068	0.13	+0.5
4,221,715	-		SO4068	0.13	+1.5
4,221,715	-		SO4068	0.13	-0.4
4,221,715	-		SO4068	0.13	-0.1
4,221,715	-		SO4068	0.13	+0.9
4,221,715	-		SO4068	0.13	-2.5
4,221,715	-		SO4068	0.13	-0.5
4,221,715	-		SO4068	0.13	+0.3
4,221,715	-		SO4068	0.13	+0.6
4,221,715	-		SO4068	0.13	-1.8
4,221,715	-		SO4068	0.13	+2.2
4,221,715	-		SO4068	0.13	+2.4
4,221,715	-		SO4068	0.13	+0.4
4,221,789	+		SO4068	0.16	+1.8
4,221,790	-		SO4068	0.16	-0.1
4,221,790	-		SO4068	0.16	-0.5
4,221,802	+		SO4068	0.17	+0.0
4,221,810	+		SO4068	0.17	+0.9
4,221,810	+		SO4068	0.17	+0.1
4,221,810	+		SO4068	0.17	-0.5
4,221,810	+		SO4068	0.17	+0.3
4,221,810	+		SO4068	0.17	+0.5
4,221,810	+		SO4068	0.17	+0.5
4,221,818	-		SO4068	0.18	-0.1
4,221,818	-		SO4068	0.18	+0.0
4,221,818	-		SO4068	0.18	+1.7
4,221,818	-		SO4068	0.18	+0.2
4,221,818	-		SO4068	0.18	+1.1
4,221,818	-		SO4068	0.18	-0.8
4,221,820	+		SO4068	0.18	+1.6
4,221,888	+		SO4068	0.21	+1.4
4,221,888	+		SO4068	0.21	+1.5
4,221,888	+		SO4068	0.21	+1.3
4,221,888	+		SO4068	0.21	+2.1
4,221,898	+		SO4068	0.22	+1.5
4,221,926	+		SO4068	0.23	+0.4
4,221,926	+		SO4068	0.23	-2.6
4,221,926	+		SO4068	0.23	+1.1
4,221,926	+		SO4068	0.23	+1.5
4,221,926	+		SO4068	0.23	+0.8
4,221,926	+		SO4068	0.23	-0.2
4,221,926	+		SO4068	0.23	+1.2
4,221,926	+		SO4068	0.23	-0.8
4,221,934	-		SO4068	0.23	-0.7
4,221,934	-		SO4068	0.23	+0.3
4,221,934	-		SO4068	0.23	+0.3
4,221,934	-		SO4068	0.23	+1.7
4,221,934	-		SO4068	0.23	+0.1
4,221,934	-		SO4068	0.23	-0.2
4,221,942	+		SO4068	0.24	-0.9
4,221,969	+		SO4068	0.25	+1.1
4,221,977	+		SO4068	0.25	+1.9
4,221,978	+		SO4068	0.25	+1.6
4,221,985	+		SO4068	0.26	-0.4
4,221,985	-		SO4068	0.26	+1.4
4,221,993	-		SO4068	0.26	+1.4
4,221,994	-		SO4068	0.26	-0.4
4,222,069	+		SO4068	0.30	+1.1
4,222,069	+		SO4068	0.30	-0.4
4,222,071	+		SO4068	0.30	+0.6
4,222,073	+		SO4068	0.30	+0.6
4,222,092	+		SO4068	0.31	-1.3
4,222,092	+		SO4068	0.31	-0.5
4,222,100	-		SO4068	0.31	-1.4
4,222,107	+		SO4068	0.31	+0.9
4,222,107	+		SO4068	0.31	-0.2
4,222,115	-		SO4068	0.32	+0.8
4,222,115	-		SO4068	0.32	+2.3
4,222,115	-		SO4068	0.32	-0.9
4,222,117	+		SO4068	0.32	+1.1
4,222,122	-		SO4068	0.32	+1.8
4,222,154	-		SO4068	0.34	+0.2
4,222,154	-		SO4068	0.34	+1.5
4,222,263	-		SO4068	0.39	+1.0
4,222,272	+		SO4068	0.39	-1.1
4,222,278	+		SO4068	0.40	+0.6
4,222,279	-		SO4068	0.40	+0.6
4,222,279	-		SO4068	0.40	-0.6
4,222,280	-		SO4068	0.40	-0.0
4,222,286	-		SO4068	0.40	-0.2
4,222,287	-		SO4068	0.40	-0.9
4,222,290	-		SO4068	0.40	-0.9
4,222,291	-		SO4068	0.40	+0.1
4,222,297	-		SO4068	0.40	+2.1
4,222,313	-		SO4068	0.41	+0.7
4,222,319	-		SO4068	0.41	+1.4
4,222,356	+		SO4068	0.43	-0.4
4,222,356	+		SO4068	0.43	+0.8
4,222,361	+		SO4068	0.43	-0.3
4,222,375	+		SO4068	0.44	+1.1
4,222,378	-		SO4068	0.44	+0.1
4,222,384	+		SO4068	0.45	-0.8
4,222,384	+		SO4068	0.45	+0.9
4,222,384	+		SO4068	0.45	-0.5
4,222,384	+		SO4068	0.45	+0.2
4,222,384	+		SO4068	0.45	+0.6
4,222,384	+		SO4068	0.45	-1.4
4,222,384	+		SO4068	0.45	-0.5
4,222,384	+		SO4068	0.45	+0.8
4,222,384	+		SO4068	0.45	+0.3
4,222,384	+		SO4068	0.45	-0.3
4,222,384	+		SO4068	0.45	+0.5
4,222,384	+		SO4068	0.45	-0.5
4,222,384	+		SO4068	0.45	+1.0
4,222,384	+		SO4068	0.45	-0.8
4,222,384	+		SO4068	0.45	+0.6
4,222,384	+		SO4068	0.45	-1.9
4,222,384	+		SO4068	0.45	+1.1
4,222,384	+		SO4068	0.45	+0.8
4,222,390	+		SO4068	0.45	+1.9
4,222,391	-		SO4068	0.45	+0.6
4,222,392	+		SO4068	0.45	+0.8
4,222,404	+		SO4068	0.46	+0.6
4,222,471	+		SO4068	0.49	+0.6
4,222,471	+		SO4068	0.49	+0.4
4,222,479	-		SO4068	0.49	+1.7
4,222,479	-		SO4068	0.49	+0.8
4,222,479	-		SO4068	0.49	+2.1
4,222,479	-		SO4068	0.49	+1.2
4,222,479	-		SO4068	0.49	-0.3
4,222,479	-		SO4068	0.49	+4.0
4,222,535	+		SO4068	0.52	+0.5
4,222,535	+		SO4068	0.52	-0.3
4,222,542	+		SO4068	0.52	-0.4
4,222,542	+		SO4068	0.52	-0.5
4,222,542	+		SO4068	0.52	+0.4
4,222,542	+		SO4068	0.52	-1.4
4,222,542	+		SO4068	0.52	-0.3
4,222,550	-		SO4068	0.52	+0.8
4,222,550	-		SO4068	0.52	-1.3
4,222,550	-		SO4068	0.52	+0.8
4,222,550	-		SO4068	0.52	+0.0
4,222,609	-		SO4068	0.55	+0.4
4,222,618	+		SO4068	0.56	+0.2
4,222,619	-		SO4068	0.56	-0.0
4,222,624	-		SO4068	0.56	+1.1
4,222,626	-		SO4068	0.56	+1.1
4,222,626	-		SO4068	0.56	+0.9
4,222,631	+		SO4068	0.56	+0.1
4,222,632	+		SO4068	0.56	-0.5
4,222,641	+		SO4068	0.57	-0.4
4,222,643	+		SO4068	0.57	+2.4
4,222,659	+		SO4068	0.58	+0.5
4,222,659	+		SO4068	0.58	+1.6
4,222,667	-		SO4068	0.58	+1.1
4,222,682	+		SO4068	0.59	-0.5
4,222,687	+		SO4068	0.59	+0.5
4,222,697	+		SO4068	0.59	-0.6
4,222,705	+		SO4068	0.60	+1.0
4,222,705	+		SO4068	0.60	-0.4
4,222,705	+		SO4068	0.60	+3.2
4,222,705	+		SO4068	0.60	+2.1
4,222,713	-		SO4068	0.60	+0.5
4,222,713	-		SO4068	0.60	+1.5
4,222,715	+		SO4068	0.60	+1.0
4,222,715	+		SO4068	0.60	+0.6
4,222,715	+		SO4068	0.60	-0.8
4,222,715	+		SO4068	0.60	-0.8
4,222,715	+		SO4068	0.60	+0.3
4,222,723	+		SO4068	0.61	+0.8
4,222,723	+		SO4068	0.61	+0.6
4,222,723	+		SO4068	0.61	+0.8
4,222,723	-		SO4068	0.61	-0.1
4,222,723	-		SO4068	0.61	+0.8
4,222,723	-		SO4068	0.61	+0.7
4,222,723	-		SO4068	0.61	+1.6
4,222,723	-		SO4068	0.61	-0.4
4,222,726	-		SO4068	0.61	+0.1
4,222,726	-		SO4068	0.61	+0.4
4,222,731	-		SO4068	0.61	-1.1
4,222,732	-		SO4068	0.61	-0.1
4,222,740	-		SO4068	0.61	-0.9
4,222,761	+		SO4068	0.62	+1.9
4,222,778	+		SO4068	0.63	+0.8
4,222,784	-		SO4068	0.64	+0.8
4,222,784	-		SO4068	0.64	+0.2
4,222,836	+		SO4068	0.66	+0.6
4,222,838	+		SO4068	0.66	-2.1
4,222,839	+		SO4068	0.66	+0.0
4,222,844	-		SO4068	0.66	-0.1
4,222,845	-		SO4068	0.66	+0.6
4,222,845	-		SO4068	0.66	+0.4
4,222,849	+		SO4068	0.67	-2.4
4,222,849	+		SO4068	0.67	+0.6
4,222,852	-		SO4068	0.67	-0.8
4,222,852	-		SO4068	0.67	+0.6
4,222,852	-		SO4068	0.67	+0.1
4,222,855	+		SO4068	0.67	+0.6
4,222,855	+		SO4068	0.67	+1.9
4,222,855	+		SO4068	0.67	+1.8
4,222,855	+		SO4068	0.67	+1.3
4,222,855	+		SO4068	0.67	-0.9
4,222,855	-		SO4068	0.67	+1.5
4,222,857	+		SO4068	0.67	-1.3
4,222,863	-		SO4068	0.67	+0.6
4,222,863	-		SO4068	0.67	+1.3
4,222,863	-		SO4068	0.67	+1.7
4,222,863	-		SO4068	0.67	-0.7
4,222,863	-		SO4068	0.67	+2.3
4,222,863	-		SO4068	0.67	+1.8
4,222,865	-		SO4068	0.67	-0.4
4,222,920	+		SO4068	0.70	+1.7
4,222,920	+		SO4068	0.70	+0.9
4,222,928	-		SO4068	0.70	+2.3
4,222,928	-		SO4068	0.70	-0.7
4,222,928	-		SO4068	0.70	+1.2
4,222,928	-		SO4068	0.70	-0.1
4,222,938	+		SO4068	0.71	+0.9
4,222,939	+		SO4068	0.71	-0.3
4,222,944	+		SO4068	0.71	+0.4
4,222,946	+		SO4068	0.71	-1.3
4,222,946	+		SO4068	0.71	+0.9
4,222,946	+		SO4068	0.71	-0.2
4,222,946	+		SO4068	0.71	+0.9
4,222,946	+		SO4068	0.71	+1.3
4,222,946	-		SO4068	0.71	-2.0
4,222,947	-		SO4068	0.71	-0.4
4,222,954	-		SO4068	0.72	-0.4
4,222,954	-		SO4068	0.72	+0.6
4,222,954	-		SO4068	0.72	-0.8
4,222,954	-		SO4068	0.72	+0.6
4,222,954	-		SO4068	0.72	-1.3
4,222,986	+		SO4068	0.73	-1.3
4,222,991	+		SO4068	0.73	-0.5
4,223,008	+		SO4068	0.74	-0.3
4,223,016	-		SO4068	0.75	-1.5
4,223,016	-		SO4068	0.75	+0.8
4,223,017	+		SO4068	0.75	-0.7
4,223,017	+		SO4068	0.75	-0.3
4,223,018	+		SO4068	0.75	+2.0
4,223,025	-		SO4068	0.75	+1.8
4,223,129	+		SO4068	0.80	+0.6
4,223,129	+		SO4068	0.80	-0.1
4,223,129	+		SO4068	0.80	-1.4
4,223,129	+		SO4068	0.80	+0.3
4,223,131	+		SO4068	0.80	+1.3
4,223,131	+		SO4068	0.80	+0.8
4,223,134	+		SO4068	0.80	+0.1
4,223,137	-		SO4068	0.80	-1.6
4,223,137	-		SO4068	0.80	-0.5
4,223,137	-		SO4068	0.80	+0.9
4,223,142	-		SO4068	0.81	-1.8
4,223,142	-		SO4068	0.81	+0.5
4,223,153	-		SO4068	0.81	-1.1
4,223,194	-		SO4068	0.83	-0.5
4,223,221	+		SO4068	0.84	+2.1
4,223,239	+		SO4068	0.85	+0.7
4,223,247	-		SO4068	0.85	+1.9
4,223,313	+		SO4068	0.89	-1.3
4,223,314	+		SO4068	0.89	-0.4
4,223,321	-		SO4068	0.89	+0.4
4,223,321	-		SO4068	0.89	-0.8
4,223,322	-		SO4068	0.89	+0.3
4,223,381	+				+1.3
4,223,381	+				-0.1
4,223,381	+				-2.9
4,223,388	-				+1.8
4,223,389	-				-2.0
4,223,389	-				+0.0
4,223,389	-				+0.6
4,223,395	-				+2.1
4,223,401	+				+0.1
4,223,441	-				-1.4
4,223,442	+				+0.8
4,223,449	+				-0.4
4,223,449	+				+1.9
4,223,449	+				+1.7
4,223,450	-				+0.0
4,223,459	+				+0.2
4,223,459	+				-1.3
4,223,467	-				-0.9
4,223,467	-				-0.6
4,223,467	-				+0.6
4,223,467	-				-0.1
4,223,490	+				-0.8
4,223,495	+				+0.6
4,223,495	+				+1.1
4,223,498	-				-1.8
4,223,503	-				-0.1
4,223,503	-				-0.2
4,223,503	-				+1.2
4,223,508	-				-0.3
4,223,513	-				+0.6
4,223,533	+				+0.6
4,223,541	+				+0.9
4,223,541	+				+1.1
4,223,541	+				-0.8
4,223,541	+				-0.4
4,223,541	+				+1.1
4,223,541	+				+0.6
4,223,541	+				-1.0
4,223,541	+				-1.4
4,223,541	+				-0.5
4,223,543	+				-1.3
4,223,549	-				+0.5
4,223,549	-				+0.2
4,223,549	-				-0.3
4,223,549	-				+1.1
4,223,549	-				+1.1
4,223,549	-				-0.3
4,223,551	+				-1.3
4,223,553	+				+0.1
4,223,553	+				-0.6
4,223,553	+				+1.1
4,223,553	+				+1.2
4,223,554	-				+0.3
4,223,558	+				-1.8
4,223,558	+				-1.4
4,223,558	+				+2.1
4,223,558	+				+0.9
4,223,558	+				+1.4
4,223,561	-				+2.5
4,223,561	-				+0.8
4,223,566	-				+1.1
4,223,566	-				-0.1
4,223,568	+				-0.7
4,223,568	+				-0.4
4,223,569	+				+0.1
4,223,569	+				-0.8
4,223,569	+				+0.5
4,223,569	+				+0.5
4,223,569	+				+0.1
4,223,576	-				-0.5
4,223,577	-				-0.3
4,223,596	+				-0.8
4,223,604	-				+0.6
4,223,617	-				+0.6
4,223,624	-				-1.6
4,223,624	-				+0.1
4,223,629	-				-0.5
4,223,634	+				-0.4
4,223,634	+				+0.9
4,223,634	+				-0.1
4,223,634	+				-0.4
4,223,634	+				-1.2
4,223,667	+				-0.6
4,223,667	+				-0.0
4,223,667	+				+0.9
4,223,667	+				+0.9
4,223,667	+				-0.9
4,223,667	+				+0.4
4,223,667	+				+0.8
4,223,671	+				-1.4
4,223,675	-				+0.4
4,223,675	-				-0.3
4,223,675	-				-0.5
4,223,675	-				-0.9
4,223,675	-				+0.8
4,223,675	-				-0.2
4,223,677	-				+1.0
4,223,677	-				+1.1
4,223,684	+				-0.3
4,223,692	-				-0.2
4,223,693	+				-0.5
4,223,715	-				+2.2
4,223,736	+				-0.0
4,223,747	+				+0.7
4,223,785	-				-1.1
4,223,907	-				-1.6
4,223,937	+				-0.3
4,223,945	-				+0.9
4,224,014	-				+2.9
4,224,035	+				+3.2
4,224,058	-				+1.5
4,224,145	+		SO4069	0.14	-0.1
4,224,189	-		SO4069	0.19	-0.5
4,224,191	+		SO4069	0.20	-0.4
4,224,193	+		SO4069	0.20	+0.6
4,224,201	-		SO4069	0.21	+1.5
4,224,201	-		SO4069	0.21	-0.4
4,224,332	+		SO4069	0.38	+0.5
4,224,341	+		SO4069	0.39	+0.0
4,224,349	-		SO4069	0.40	-0.4
4,224,396	-		SO4069	0.46	+0.1
4,224,435	-		SO4069	0.51	-1.1
4,224,440	-		SO4069	0.51	-1.5
4,224,440	-		SO4069	0.51	+0.2
4,224,536	-		SO4069	0.63	+0.2