Strain Fitness in Shewanella oneidensis MR-1 around SO2384

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
2,485,064	-		SO2383	0.16	-0.4
2,485,066	+		SO2383	0.17	+0.6
2,485,074	-		SO2383	0.18	-0.8
2,485,074	-		SO2383	0.18	-0.4
2,485,088	-		SO2383	0.21	+0.9
2,485,155	-		SO2383	0.34	-1.1
2,485,176	+		SO2383	0.38	+0.7
2,485,176	+		SO2383	0.38	-0.4
2,485,227	+		SO2383	0.49	+1.5
2,485,291	+		SO2383	0.61	+0.7
2,485,297	-		SO2383	0.62	-0.9
2,485,299	-		SO2383	0.63	-0.3
2,485,301	+		SO2383	0.63	+0.9
2,485,308	+		SO2383	0.65	+0.3
2,485,309	-		SO2383	0.65	+1.0
2,485,316	-		SO2383	0.66	+0.4
2,485,316	-		SO2383	0.66	+0.9
2,485,316	-		SO2383	0.66	+0.4
2,485,336	+		SO2383	0.70	-1.6
2,485,336	-		SO2383	0.70	-0.3
2,485,343	+		SO2383	0.72	+0.1
2,485,350	+		SO2383	0.73	-0.3
2,485,351	+		SO2383	0.73	-0.3
2,485,351	-		SO2383	0.73	-0.0
2,485,351	-		SO2383	0.73	+0.1
2,485,351	-		SO2383	0.73	+0.9
2,485,359	+		SO2383	0.75	+2.7
2,485,367	-		SO2383	0.76	-0.2
2,485,446	+				+0.3
2,485,446	+				+0.7
2,485,637	-				-0.7
2,485,812	+				+0.8
2,485,871	+				+1.3
2,485,874	-				-0.6
2,485,904	+				+0.7
2,485,907	-				+0.7
2,486,098	-				-0.9
2,486,114	+				-0.0
2,486,291	+		SO2384	0.21	-2.2
2,486,291	+		SO2384	0.21	-0.1
2,486,299	-		SO2384	0.22	+1.0
2,486,299	-		SO2384	0.22	+0.8
2,486,299	-		SO2384	0.22	-0.5
2,486,304	-		SO2384	0.22	+0.9
2,486,310	-		SO2384	0.23	+0.5
2,486,318	-		SO2384	0.23	+1.1
2,486,333	+		SO2384	0.25	+0.9
2,486,418	+		SO2384	0.32	-1.4
2,486,470	+		SO2384	0.37	-2.4
2,486,480	+		SO2384	0.38	-1.9
2,486,487	-		SO2384	0.39	+0.4
2,486,488	-		SO2384	0.39	-0.3
2,486,603	+		SO2384	0.49	-0.9
2,486,628	+		SO2384	0.51	+0.1
2,486,650	+		SO2384	0.53	+0.7
2,486,650	+		SO2384	0.53	+0.2
2,486,657	-		SO2384	0.54	-0.3
2,486,661	+		SO2384	0.54	+0.6
2,486,661	+		SO2384	0.54	-0.0
2,486,661	+		SO2384	0.54	+1.1
2,486,669	-		SO2384	0.55	-0.1
2,486,763	+		SO2384	0.64	+1.1
2,486,763	+		SO2384	0.64	+1.1
2,486,763	+		SO2384	0.64	-1.2
2,486,763	+		SO2384	0.64	+1.3
2,486,763	+		SO2384	0.64	+0.8
2,486,763	+		SO2384	0.64	+0.6
2,486,763	+		SO2384	0.64	+0.4
2,486,763	+		SO2384	0.64	+1.4
2,486,763	+		SO2384	0.64	+0.9
2,486,764	+		SO2384	0.64	-1.5
2,486,764	+		SO2384	0.64	-0.1
2,486,764	+		SO2384	0.64	+1.4
2,486,764	+		SO2384	0.64	-1.0
2,486,764	+		SO2384	0.64	+1.0
2,486,764	+		SO2384	0.64	+0.9
2,486,764	+		SO2384	0.64	-1.2
2,486,764	+		SO2384	0.64	-2.2
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	-0.4
2,486,764	+		SO2384	0.64	+0.0
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	-0.2
2,486,764	+		SO2384	0.64	+1.2
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.3
2,486,764	+		SO2384	0.64	-2.4
2,486,764	+		SO2384	0.64	+0.0
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.9
2,486,764	+		SO2384	0.64	-0.5
2,486,764	+		SO2384	0.64	+1.4
2,486,764	+		SO2384	0.64	+0.4
2,486,764	+		SO2384	0.64	+2.0
2,486,764	+		SO2384	0.64	-0.3
2,486,764	+		SO2384	0.64	+1.3
2,486,764	+		SO2384	0.64	+1.3
2,486,764	+		SO2384	0.64	+1.0
2,486,764	+		SO2384	0.64	-3.9
2,486,764	+		SO2384	0.64	+0.4
2,486,764	+		SO2384	0.64	-0.5
2,486,764	+		SO2384	0.64	+1.5
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	-0.4
2,486,764	+		SO2384	0.64	-2.1
2,486,764	+		SO2384	0.64	+1.5
2,486,764	+		SO2384	0.64	-1.1
2,486,764	+		SO2384	0.64	-0.6
2,486,764	+		SO2384	0.64	+0.3
2,486,764	+		SO2384	0.64	+0.8
2,486,764	+		SO2384	0.64	-1.3
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+1.1
2,486,764	+		SO2384	0.64	-0.3
2,486,764	+		SO2384	0.64	-0.4
2,486,764	+		SO2384	0.64	+4.4
2,486,764	+		SO2384	0.64	+0.7
2,486,764	+		SO2384	0.64	+0.8
2,486,770	-		SO2384	0.64	-0.4
2,486,771	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	+1.1
2,486,772	-		SO2384	0.64	-1.2
2,486,772	-		SO2384	0.64	+2.2
2,486,772	-		SO2384	0.64	-0.9
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	-2.3
2,486,772	-		SO2384	0.64	+1.7
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.3
2,486,772	-		SO2384	0.64	-0.8
2,486,772	-		SO2384	0.64	+1.0
2,486,772	-		SO2384	0.64	+2.3
2,486,772	-		SO2384	0.64	-0.0
2,486,772	-		SO2384	0.64	-2.3
2,486,772	-		SO2384	0.64	+1.3
2,486,772	-		SO2384	0.64	+0.4
2,486,772	-		SO2384	0.64	+0.9
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	-0.3
2,486,772	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	+0.3
2,486,772	-		SO2384	0.64	+0.8
2,486,772	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	+0.9
2,486,772	-		SO2384	0.64	+2.9
2,486,772	-		SO2384	0.64	+1.0
2,486,772	-		SO2384	0.64	-0.4
2,486,772	-		SO2384	0.64	-3.7
2,486,772	-		SO2384	0.64	+0.3
2,486,772	-		SO2384	0.64	+1.7
2,486,772	-		SO2384	0.64	+2.3
2,486,772	-		SO2384	0.64	+0.8
2,486,772	-		SO2384	0.64	-0.3
2,486,772	-		SO2384	0.64	+1.2
2,486,772	-		SO2384	0.64	+0.7
2,486,772	-		SO2384	0.64	-0.0
2,486,772	-		SO2384	0.64	-2.2
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.9
2,486,772	-		SO2384	0.64	+0.9
2,486,772	-		SO2384	0.64	-1.6
2,486,772	-		SO2384	0.64	-0.4
2,486,774	+		SO2384	0.65	-0.5
2,486,774	+		SO2384	0.65	+1.1
2,486,782	-		SO2384	0.65	+1.2
2,486,782	-		SO2384	0.65	-0.6
2,486,782	-		SO2384	0.65	+0.5
2,486,785	-		SO2384	0.65	+1.0
2,486,848	+		SO2384	0.71	+0.4
2,486,893	+		SO2384	0.75	+0.4
2,486,893	+		SO2384	0.75	-1.1
2,486,893	+		SO2384	0.75	+0.2
2,486,893	+		SO2384	0.75	+0.9
2,486,893	+		SO2384	0.75	+0.7
2,486,901	-		SO2384	0.76	+2.9
2,486,901	-		SO2384	0.76	-1.2
2,486,901	-		SO2384	0.76	-2.2
2,486,902	-		SO2384	0.76	+0.1
2,486,916	+		SO2384	0.77	-0.9
2,486,921	+		SO2384	0.78	+0.9
2,486,923	-		SO2384	0.78	+1.3
2,486,932	+		SO2384	0.79	-0.4
2,486,935	-		SO2384	0.79	-0.6
2,487,034	-		SO2384	0.88	+0.6
2,487,034	-		SO2384	0.88	-0.8
2,487,034	-		SO2384	0.88	+1.6
2,487,034	-		SO2384	0.88	+0.5
2,487,058	+				+3.1
2,487,104	+				+3.1
2,487,114	+				-1.9
2,487,114	+				-0.9
2,487,116	-				+0.8
2,487,118	+				+0.9
2,487,122	-				+1.4
2,487,122	-				+0.9
2,487,133	+				-0.7
2,487,133	+				+1.7
2,487,141	-				+0.3
2,487,300	+				-0.1
2,487,364	+				+0.3
2,487,364	+				+0.1
2,487,364	+				-0.2
2,487,364	+				+0.1
2,487,364	+				-1.3
2,487,364	+				+0.8
2,487,372	-				-0.1
2,487,457	+				-0.4
2,487,470	-				+0.7
2,487,490	+				-2.2
2,487,508	-				+1.0
2,487,510	+				-0.1
2,487,541	-				+0.8
2,487,544	+				+1.0
2,487,555	-				+0.5
2,487,562	-		SO2385	0.10	-0.5
2,487,563	-		SO2385	0.10	+0.3
2,487,607	-		SO2385	0.12	+1.8
2,487,614	+		SO2385	0.13	+0.8
2,487,614	+		SO2385	0.13	+0.5
2,487,763	-		SO2385	0.20	-0.1
2,487,776	-		SO2385	0.21	+0.3
2,488,106	-		SO2385	0.37	-0.6
2,488,120	+		SO2385	0.37	+0.1
2,488,120	+		SO2385	0.37	+0.4
2,488,150	-		SO2385	0.39	-0.7
2,488,150	-		SO2385	0.39	-0.4