Strain Fitness in Shewanella oneidensis MR-1 around SO1932

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucB and sucC are separated by 117 nucleotidessucC and sucD overlap by 1 nucleotides SO1931: sucB - 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (NCBI ptt file), at 2,037,191 to 2,038,378 sucB SO1932: sucC - succinyl-CoA synthase, beta subunit (NCBI ptt file), at 2,038,496 to 2,039,662 sucC SO1933: sucD - succinyl-CoA synthase, alpha subunit (NCBI ptt file), at 2,039,662 to 2,040,534 sucD Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -2 -1 0 1at 2039.289 kb on + strand, within sucC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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2,039,289 + sucC SO1932 0.68 -2.0

Or see this region's nucleotide sequence