Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroG and SO0757 are separated by 236 nucleotides SO0757 and SO0758 are separated by 129 nucleotides SO0758 and amt are separated by 109 nucleotides
SO0756: aroG - phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file), at 771,939 to 772,997
aroG
SO0757: SO0757 - TPR domain protein (NCBI ptt file), at 773,234 to 774,421
SO0757
SO0758: SO0758 - hypothetical protein (NCBI ptt file), at 774,551 to 774,898
SO0758
SO0760: amt - ammonium transporter (NCBI ptt file), at 775,008 to 776,234
amt
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.283 kb on - strand, within aroG at 772.466 kb on - strand, within aroG at 772.466 kb on - strand, within aroG at 772.525 kb on - strand, within aroG at 772.527 kb on - strand, within aroG at 772.550 kb on + strand, within aroG at 772.574 kb on - strand, within aroG at 772.587 kb on + strand, within aroG at 772.587 kb on + strand, within aroG at 772.611 kb on + strand, within aroG at 772.613 kb on - strand, within aroG at 772.641 kb on - strand, within aroG at 772.697 kb on - strand, within aroG at 772.963 kb on - strand at 773.037 kb on - strand at 773.050 kb on + strand at 773.050 kb on + strand at 773.231 kb on + strand at 773.232 kb on - strand at 773.239 kb on - strand at 773.258 kb on - strand at 773.363 kb on + strand, within SO0757 at 773.397 kb on + strand, within SO0757 at 773.446 kb on - strand, within SO0757 at 773.451 kb on + strand, within SO0757 at 773.459 kb on - strand, within SO0757 at 773.554 kb on - strand, within SO0757 at 773.581 kb on + strand, within SO0757 at 773.715 kb on + strand, within SO0757 at 773.723 kb on - strand, within SO0757 at 773.726 kb on + strand, within SO0757 at 773.727 kb on + strand, within SO0757 at 773.727 kb on + strand, within SO0757 at 773.836 kb on + strand, within SO0757 at 773.844 kb on - strand, within SO0757 at 773.961 kb on + strand, within SO0757 at 773.978 kb on - strand, within SO0757 at 774.030 kb on + strand, within SO0757 at 774.053 kb on + strand, within SO0757 at 774.053 kb on + strand, within SO0757 at 774.061 kb on - strand, within SO0757 at 774.153 kb on - strand, within SO0757 at 774.172 kb on - strand, within SO0757 at 774.240 kb on - strand, within SO0757 at 774.240 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.371 kb on + strand at 774.430 kb on + strand at 774.437 kb on + strand at 774.548 kb on + strand at 774.556 kb on - strand at 774.680 kb on + strand, within SO0758 at 774.688 kb on - strand, within SO0758 at 774.688 kb on - strand, within SO0758 at 774.700 kb on + strand, within SO0758 at 774.706 kb on - strand, within SO0758 at 774.880 kb on + strand at 774.885 kb on + strand at 774.893 kb on - strand at 774.894 kb on - strand at 774.951 kb on + strand at 775.025 kb on - strand at 775.076 kb on - strand at 775.230 kb on + strand, within amt at 775.310 kb on + strand, within amt at 775.322 kb on + strand, within amt at 775.330 kb on - strand, within amt
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 772,283 - aroG SO0756 0.32 -0.9 772,466 - aroG SO0756 0.50 -1.6 772,466 - aroG SO0756 0.50 -1.9 772,525 - aroG SO0756 0.55 +0.2 772,527 - aroG SO0756 0.56 +1.3 772,550 + aroG SO0756 0.58 +1.8 772,574 - aroG SO0756 0.60 -0.2 772,587 + aroG SO0756 0.61 -2.5 772,587 + aroG SO0756 0.61 -1.3 772,611 + aroG SO0756 0.63 +0.3 772,613 - aroG SO0756 0.64 -0.7 772,641 - aroG SO0756 0.66 +0.1 772,697 - aroG SO0756 0.72 -1.4 772,963 - +0.2 773,037 - -0.6 773,050 + -0.0 773,050 + +0.5 773,231 + -0.7 773,232 - +0.3 773,239 - -0.7 773,258 - -0.4 773,363 + SO0757 0.11 -0.7 773,397 + SO0757 0.14 -2.8 773,446 - SO0757 0.18 -1.2 773,451 + SO0757 0.18 +0.3 773,459 - SO0757 0.19 +0.2 773,554 - SO0757 0.27 +0.1 773,581 + SO0757 0.29 -2.3 773,715 + SO0757 0.40 +0.3 773,723 - SO0757 0.41 +1.0 773,726 + SO0757 0.41 +1.4 773,727 + SO0757 0.41 +0.0 773,727 + SO0757 0.41 -0.1 773,836 + SO0757 0.51 -0.6 773,844 - SO0757 0.51 +0.2 773,961 + SO0757 0.61 -1.6 773,978 - SO0757 0.63 +1.0 774,030 + SO0757 0.67 +0.4 774,053 + SO0757 0.69 -0.3 774,053 + SO0757 0.69 -1.7 774,061 - SO0757 0.70 +0.0 774,153 - SO0757 0.77 +0.6 774,172 - SO0757 0.79 +0.4 774,240 - SO0757 0.85 +1.4 774,240 - SO0757 0.85 -0.0 774,245 - SO0757 0.85 +0.5 774,245 - SO0757 0.85 -0.7 774,245 - SO0757 0.85 -0.1 774,245 - SO0757 0.85 +0.4 774,371 + -0.2 774,430 + +0.3 774,437 + +0.2 774,548 + -0.9 774,556 - +0.3 774,680 + SO0758 0.37 +0.0 774,688 - SO0758 0.39 +1.4 774,688 - SO0758 0.39 -1.0 774,700 + SO0758 0.43 -0.6 774,706 - SO0758 0.45 -1.3 774,880 + +0.3 774,885 + -0.3 774,893 - +0.2 774,894 - +1.0 774,951 + +0.8 775,025 - -0.5 775,076 - +0.6 775,230 + amt SO0760 0.18 +0.2 775,310 + amt SO0760 0.25 +0.1 775,322 + amt SO0760 0.26 +0.9 775,330 - amt SO0760 0.26 +0.5
Or see this region's nucleotide sequence