Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0719 and SO0720 are separated by 227 nucleotides SO0720 and SO0721 are separated by 192 nucleotides
SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645
SO0719
SO0720: SO0720 - hypothetical protein (NCBI ptt file), at 736,873 to 737,382
SO0720
SO0721: SO0721 - conserved hypothetical protein (NCBI ptt file), at 737,575 to 737,826
SO0721
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.882 kb on - strand, within SO0719 at 735.905 kb on + strand, within SO0719 at 735.910 kb on + strand, within SO0719 at 735.915 kb on + strand, within SO0719 at 735.918 kb on - strand, within SO0719 at 735.923 kb on - strand, within SO0719 at 735.928 kb on - strand, within SO0719 at 735.983 kb on - strand, within SO0719 at 736.022 kb on - strand, within SO0719 at 736.024 kb on + strand, within SO0719 at 736.172 kb on + strand, within SO0719 at 736.195 kb on - strand, within SO0719 at 736.202 kb on + strand, within SO0719 at 736.303 kb on - strand, within SO0719 at 736.500 kb on - strand at 736.500 kb on - strand at 736.508 kb on - strand at 736.652 kb on + strand at 736.760 kb on + strand at 736.800 kb on + strand at 736.824 kb on + strand at 736.867 kb on - strand at 736.897 kb on + strand at 736.905 kb on - strand at 737.006 kb on - strand, within SO0720 at 737.234 kb on - strand, within SO0720 at 737.258 kb on - strand, within SO0720 at 737.258 kb on - strand, within SO0720 at 737.277 kb on - strand, within SO0720 at 737.282 kb on + strand, within SO0720 at 737.285 kb on - strand, within SO0720 at 737.319 kb on + strand, within SO0720 at 737.421 kb on - strand at 737.426 kb on - strand at 737.444 kb on - strand at 737.451 kb on - strand at 737.461 kb on - strand at 737.517 kb on - strand at 737.617 kb on + strand, within SO0721 at 737.617 kb on + strand, within SO0721 at 737.642 kb on + strand, within SO0721 at 737.650 kb on - strand, within SO0721 at 737.685 kb on - strand, within SO0721
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 735,882 - SO0719 0.66 +0.3 735,905 + SO0719 0.67 -0.6 735,910 + SO0719 0.67 -0.1 735,915 + SO0719 0.67 +0.4 735,918 - SO0719 0.68 +1.4 735,923 - SO0719 0.68 -0.4 735,928 - SO0719 0.68 +0.3 735,983 - SO0719 0.70 +0.7 736,022 - SO0719 0.72 +0.5 736,024 + SO0719 0.72 +1.0 736,172 + SO0719 0.79 +0.9 736,195 - SO0719 0.80 +1.8 736,202 + SO0719 0.80 +0.6 736,303 - SO0719 0.85 -0.6 736,500 - +0.2 736,500 - +0.4 736,508 - -0.4 736,652 + -0.7 736,760 + -1.5 736,800 + -1.3 736,824 + +1.2 736,867 - +2.1 736,897 + -1.2 736,905 - +2.3 737,006 - SO0720 0.26 -1.3 737,234 - SO0720 0.71 -1.1 737,258 - SO0720 0.75 +0.3 737,258 - SO0720 0.75 -1.0 737,277 - SO0720 0.79 -0.6 737,282 + SO0720 0.80 -3.4 737,285 - SO0720 0.81 -0.0 737,319 + SO0720 0.87 -0.1 737,421 - +1.8 737,426 - -0.2 737,444 - -0.1 737,451 - -0.6 737,461 - -0.1 737,517 - +0.6 737,617 + SO0721 0.17 +0.4 737,617 + SO0721 0.17 -0.1 737,642 + SO0721 0.27 +0.9 737,650 - SO0721 0.30 +1.3 737,685 - SO0721 0.44 -0.1
Or see this region's nucleotide sequence