Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0544 and SO0544.1 overlap by 4 nucleotides SO0544.1 and SO0545 are separated by 3 nucleotides SO0545 and rimK-1 are separated by 151 nucleotides
SO0544: SO0544 - sensory box histidine kinase (NCBI ptt file), at 564,464 to 566,617
SO0544
SO0544.1: SO0544.1 - hypothetical cheY-homologous receiver domain protein (NCBI ptt file), at 566,614 to 567,048
SO0544.1
SO0545: SO0545 - response regulator (NCBI ptt file), at 567,052 to 568,779
SO0545
SO0546: rimK-1 - ribosomal protein S6 modification protein (NCBI ptt file), at 568,931 to 569,836
rimK-1
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 566.086 kb on - strand, within SO0544 at 566.175 kb on + strand, within SO0544 at 566.329 kb on - strand, within SO0544 at 566.335 kb on - strand, within SO0544 at 566.342 kb on - strand, within SO0544 at 566.393 kb on + strand, within SO0544 at 566.402 kb on + strand at 566.454 kb on + strand at 566.486 kb on + strand at 566.495 kb on - strand at 566.691 kb on - strand, within SO0544.1 at 566.722 kb on + strand, within SO0544.1 at 566.723 kb on - strand, within SO0544.1 at 566.752 kb on - strand, within SO0544.1 at 566.887 kb on - strand, within SO0544.1 at 566.888 kb on + strand, within SO0544.1 at 566.892 kb on - strand, within SO0544.1 at 566.903 kb on + strand, within SO0544.1 at 566.914 kb on + strand, within SO0544.1 at 566.914 kb on + strand, within SO0544.1 at 566.922 kb on - strand, within SO0544.1 at 566.925 kb on + strand, within SO0544.1 at 567.026 kb on + strand at 567.041 kb on + strand at 567.041 kb on + strand at 567.049 kb on - strand at 567.134 kb on + strand at 567.134 kb on + strand at 567.170 kb on + strand at 567.170 kb on + strand at 567.239 kb on + strand, within SO0545 at 567.239 kb on + strand, within SO0545 at 567.239 kb on + strand, within SO0545 at 567.239 kb on + strand, within SO0545 at 567.239 kb on + strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.247 kb on - strand, within SO0545 at 567.330 kb on + strand, within SO0545 at 567.330 kb on + strand, within SO0545 at 567.330 kb on + strand, within SO0545 at 567.439 kb on + strand, within SO0545 at 567.515 kb on + strand, within SO0545 at 567.523 kb on - strand, within SO0545 at 567.556 kb on - strand, within SO0545 at 567.679 kb on + strand, within SO0545 at 567.679 kb on + strand, within SO0545 at 567.679 kb on + strand, within SO0545 at 567.687 kb on - strand, within SO0545 at 567.687 kb on - strand, within SO0545 at 567.689 kb on + strand, within SO0545 at 567.786 kb on + strand, within SO0545 at 567.842 kb on - strand, within SO0545 at 567.874 kb on + strand, within SO0545 at 567.938 kb on + strand, within SO0545 at 567.980 kb on - strand, within SO0545 at 568.022 kb on + strand, within SO0545 at 568.038 kb on + strand, within SO0545 at 568.045 kb on - strand, within SO0545 at 568.086 kb on - strand, within SO0545 at 568.196 kb on - strand, within SO0545 at 568.222 kb on - strand, within SO0545 at 568.225 kb on + strand, within SO0545 at 568.230 kb on + strand, within SO0545 at 568.230 kb on + strand, within SO0545 at 568.238 kb on - strand, within SO0545 at 568.313 kb on + strand, within SO0545 at 568.352 kb on + strand, within SO0545 at 568.352 kb on + strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.436 kb on + strand, within SO0545 at 568.590 kb on - strand, within SO0545 at 568.597 kb on + strand, within SO0545 at 568.599 kb on + strand, within SO0545 at 568.616 kb on + strand at 568.810 kb on - strand at 568.810 kb on - strand at 568.810 kb on - strand at 568.837 kb on + strand at 568.837 kb on + strand at 568.837 kb on + strand at 568.850 kb on - strand at 568.855 kb on - strand at 568.860 kb on - strand at 568.860 kb on - strand at 568.871 kb on + strand at 568.916 kb on - strand at 568.916 kb on - strand at 568.916 kb on - strand at 568.966 kb on + strand at 568.974 kb on - strand at 568.986 kb on - strand at 569.229 kb on + strand, within rimK-1 at 569.261 kb on + strand, within rimK-1 at 569.267 kb on + strand, within rimK-1 at 569.361 kb on + strand, within rimK-1 at 569.364 kb on - strand, within rimK-1 at 569.373 kb on + strand, within rimK-1 at 569.507 kb on - strand, within rimK-1 at 569.572 kb on + strand, within rimK-1 at 569.607 kb on + strand, within rimK-1 at 569.615 kb on - strand, within rimK-1 at 569.686 kb on + strand, within rimK-1 at 569.703 kb on + strand, within rimK-1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 566,086 - SO0544 0.75 +0.6 566,175 + SO0544 0.79 -0.9 566,329 - SO0544 0.87 +0.1 566,335 - SO0544 0.87 -0.1 566,342 - SO0544 0.87 +0.0 566,393 + SO0544 0.90 -0.5 566,402 + +0.8 566,454 + -0.7 566,486 + -0.6 566,495 - +0.1 566,691 - SO0544.1 0.18 -1.1 566,722 + SO0544.1 0.25 -1.2 566,723 - SO0544.1 0.25 +0.9 566,752 - SO0544.1 0.32 -0.9 566,887 - SO0544.1 0.63 +0.2 566,888 + SO0544.1 0.63 +1.2 566,892 - SO0544.1 0.64 +1.1 566,903 + SO0544.1 0.66 +1.3 566,914 + SO0544.1 0.69 -0.4 566,914 + SO0544.1 0.69 -1.4 566,922 - SO0544.1 0.71 +0.8 566,925 + SO0544.1 0.71 -0.6 567,026 + +0.3 567,041 + +0.2 567,041 + -3.1 567,049 - -0.1 567,134 + -1.2 567,134 + -1.0 567,170 + +1.8 567,170 + +0.6 567,239 + SO0545 0.11 +0.1 567,239 + SO0545 0.11 -1.2 567,239 + SO0545 0.11 +1.4 567,239 + SO0545 0.11 -0.9 567,239 + SO0545 0.11 +0.4 567,247 - SO0545 0.11 -1.4 567,247 - SO0545 0.11 -0.7 567,247 - SO0545 0.11 +0.4 567,247 - SO0545 0.11 -1.4 567,247 - SO0545 0.11 -0.8 567,247 - SO0545 0.11 +1.3 567,247 - SO0545 0.11 -0.1 567,247 - SO0545 0.11 +0.0 567,247 - SO0545 0.11 +1.1 567,247 - SO0545 0.11 -1.3 567,247 - SO0545 0.11 -0.7 567,330 + SO0545 0.16 +1.6 567,330 + SO0545 0.16 -0.2 567,330 + SO0545 0.16 +1.2 567,439 + SO0545 0.22 +0.4 567,515 + SO0545 0.27 +1.6 567,523 - SO0545 0.27 +2.9 567,556 - SO0545 0.29 -2.9 567,679 + SO0545 0.36 +0.0 567,679 + SO0545 0.36 +0.9 567,679 + SO0545 0.36 +0.2 567,687 - SO0545 0.37 +0.4 567,687 - SO0545 0.37 -0.5 567,689 + SO0545 0.37 +0.4 567,786 + SO0545 0.42 -0.9 567,842 - SO0545 0.46 +0.5 567,874 + SO0545 0.48 +0.9 567,938 + SO0545 0.51 +0.3 567,980 - SO0545 0.54 -0.7 568,022 + SO0545 0.56 -0.7 568,038 + SO0545 0.57 +1.1 568,045 - SO0545 0.57 +3.3 568,086 - SO0545 0.60 -0.7 568,196 - SO0545 0.66 -0.8 568,222 - SO0545 0.68 -1.6 568,225 + SO0545 0.68 +1.0 568,230 + SO0545 0.68 +1.3 568,230 + SO0545 0.68 +0.2 568,238 - SO0545 0.69 -0.1 568,313 + SO0545 0.73 -1.1 568,352 + SO0545 0.75 +0.8 568,352 + SO0545 0.75 -0.2 568,360 - SO0545 0.76 -0.5 568,360 - SO0545 0.76 -0.3 568,360 - SO0545 0.76 +0.4 568,360 - SO0545 0.76 +0.5 568,436 + SO0545 0.80 +0.3 568,590 - SO0545 0.89 -1.5 568,597 + SO0545 0.89 -0.3 568,599 + SO0545 0.90 +1.3 568,616 + -0.6 568,810 - -1.1 568,810 - +0.1 568,810 - +0.6 568,837 + -0.2 568,837 + -0.6 568,837 + -0.8 568,850 - +1.2 568,855 - -1.0 568,860 - -1.7 568,860 - -1.5 568,871 + -1.2 568,916 - -2.3 568,916 - -0.6 568,916 - -0.5 568,966 + +0.1 568,974 - -0.9 568,986 - +0.2 569,229 + rimK-1 SO0546 0.33 -1.3 569,261 + rimK-1 SO0546 0.36 -0.6 569,267 + rimK-1 SO0546 0.37 -0.8 569,361 + rimK-1 SO0546 0.47 -2.0 569,364 - rimK-1 SO0546 0.48 +0.6 569,373 + rimK-1 SO0546 0.49 -1.9 569,507 - rimK-1 SO0546 0.64 -0.3 569,572 + rimK-1 SO0546 0.71 -0.8 569,607 + rimK-1 SO0546 0.75 +1.9 569,615 - rimK-1 SO0546 0.75 -2.6 569,686 + rimK-1 SO0546 0.83 -0.5 569,703 + rimK-1 SO0546 0.85 -0.1
Or see this region's nucleotide sequence