Strain Fitness in Shewanella oneidensis MR-1 around SO0330

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0326 and SO0329 are separated by 329 nucleotidesSO0329 and SO0330 are separated by 21 nucleotidesSO0330 and SO0331 overlap by 1 nucleotidesSO0331 and SO0332 are separated by 40 nucleotides SO0326: SO0326 - hypothetical protein (NCBI ptt file), at 331,225 to 332,148 SO0326 SO0329: SO0329 - hypothetical protein (NCBI ptt file), at 332,478 to 332,699 SO0329 SO0330: SO0330 - conserved hypothetical protein (NCBI ptt file), at 332,721 to 334,175 SO0330 SO0331: SO0331 - conserved hypothetical protein (NCBI ptt file), at 334,175 to 334,480 SO0331 SO0332: SO0332 - hypothetical kinase (NCBI ptt file), at 334,521 to 335,558 SO0332 Position (kb) 332 333 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.751 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.835 kb on - strand, within SO0326at 331.839 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.893 kb on + strand, within SO0326at 331.976 kb on - strand, within SO0326at 332.021 kb on + strand, within SO0326at 332.192 kb on + strandat 332.210 kb on - strandat 332.219 kb on - strandat 332.219 kb on - strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.292 kb on - strandat 332.311 kb on - strandat 332.352 kb on - strandat 332.375 kb on + strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.404 kb on - strandat 332.418 kb on + strandat 332.421 kb on - strandat 332.426 kb on - strandat 332.426 kb on - strandat 332.477 kb on - strandat 332.477 kb on - strandat 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.540 kb on + strand, within SO0329at 332.540 kb on - strand, within SO0329at 332.553 kb on + strand, within SO0329at 332.562 kb on - strand, within SO0329at 332.568 kb on + strand, within SO0329at 332.618 kb on - strand, within SO0329at 332.634 kb on - strand, within SO0329at 332.665 kb on + strand, within SO0329at 332.673 kb on - strand, within SO0329at 332.677 kb on + strandat 332.702 kb on - strandat 332.734 kb on - strandat 332.916 kb on - strand, within SO0330at 332.916 kb on - strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.950 kb on - strand, within SO0330at 332.982 kb on - strand, within SO0330at 332.999 kb on + strand, within SO0330at 332.999 kb on + strand, within SO0330at 333.007 kb on - strand, within SO0330at 333.031 kb on - strand, within SO0330at 333.090 kb on - strand, within SO0330at 333.122 kb on + strand, within SO0330at 333.142 kb on + strand, within SO0330at 333.150 kb on - strand, within SO0330at 333.163 kb on + strand, within SO0330at 333.163 kb on + strand, within SO0330at 333.229 kb on + strand, within SO0330at 333.237 kb on - strand, within SO0330at 333.331 kb on - strand, within SO0330at 333.438 kb on + strand, within SO0330at 333.444 kb on - strand, within SO0330at 333.508 kb on - strand, within SO0330at 333.611 kb on + strand, within SO0330at 333.614 kb on + strand, within SO0330at 333.639 kb on - strand, within SO0330at 333.651 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.683 kb on + strand, within SO0330at 333.686 kb on - strand, within SO0330at 333.716 kb on - strand, within SO0330at 333.718 kb on - strand, within SO0330at 333.768 kb on - strand, within SO0330at 333.768 kb on - strand, within SO0330at 333.934 kb on + strand, within SO0330at 333.934 kb on + strand, within SO0330at 333.988 kb on - strand, within SO0330at 334.096 kb on - strandat 334.227 kb on + strand, within SO0331at 334.227 kb on + strand, within SO0331at 334.227 kb on + strand, within SO0331at 334.228 kb on - strand, within SO0331at 334.235 kb on - strand, within SO0331at 334.428 kb on - strand, within SO0331at 334.462 kb on + strandat 334.470 kb on - strandat 334.542 kb on - strandat 334.542 kb on - strandat 334.542 kb on - strandat 334.550 kb on - strandat 334.606 kb on - strandat 334.641 kb on - strand, within SO0332at 334.641 kb on - strand, within SO0332at 334.657 kb on + strand, within SO0332at 334.713 kb on + strand, within SO0332at 334.713 kb on + strand, within SO0332at 334.834 kb on - strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.836 kb on + strand, within SO0332at 334.842 kb on + strand, within SO0332at 334.843 kb on + strand, within SO0332at 334.844 kb on - strand, within SO0332at 334.844 kb on - strand, within SO0332at 334.851 kb on - strand, within SO0332at 334.851 kb on - strand, within SO0332at 334.929 kb on - strand, within SO0332at 334.967 kb on + strand, within SO0332at 335.004 kb on - strand, within SO0332at 335.044 kb on + strand, within SO0332at 335.044 kb on + strand, within SO0332at 335.062 kb on - strand, within SO0332at 335.062 kb on - strand, within SO0332at 335.109 kb on + strand, within SO0332at 335.120 kb on + strand, within SO0332at 335.128 kb on - strand, within SO0332at 335.128 kb on - strand, within SO0332at 335.128 kb on - strand, within SO0332at 335.128 kb on - strand, within SO0332at 335.146 kb on + strand, within SO0332

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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331,751 - SO0326 0.57 +0.0
331,777 - SO0326 0.60 -0.2
331,777 - SO0326 0.60 +0.1
331,835 - SO0326 0.66 -0.9
331,839 + SO0326 0.66 -1.0
331,859 + SO0326 0.69 +1.3
331,859 + SO0326 0.69 -0.5
331,859 + SO0326 0.69 -0.8
331,859 + SO0326 0.69 -0.1
331,859 + SO0326 0.69 +1.2
331,859 + SO0326 0.69 -1.5
331,859 + SO0326 0.69 -0.3
331,893 + SO0326 0.72 -0.6
331,976 - SO0326 0.81 -0.3
332,021 + SO0326 0.86 -1.1
332,192 + +0.1
332,210 - +0.9
332,219 - +0.2
332,219 - +0.2
332,260 + +0.6
332,260 + -2.2
332,260 + -1.9
332,268 - -2.8
332,268 - -0.9
332,268 - -0.1
332,268 - -0.3
332,292 - -0.9
332,311 - -1.0
332,352 - -1.9
332,375 + -1.2
332,383 - +0.6
332,383 - -1.6
332,383 - +1.1
332,404 - +0.0
332,418 + -0.9
332,421 - -1.5
332,426 - -1.2
332,426 - -0.8
332,477 - -0.4
332,477 - +2.7
332,530 + SO0329 0.23 +1.1
332,530 + SO0329 0.23 +0.2
332,530 + SO0329 0.23 +1.0
332,530 + SO0329 0.23 +0.1
332,538 - SO0329 0.27 -1.5
332,538 - SO0329 0.27 -0.9
332,538 - SO0329 0.27 -1.3
332,538 - SO0329 0.27 -1.7
332,540 + SO0329 0.28 -0.4
332,540 - SO0329 0.28 -1.3
332,553 + SO0329 0.34 +1.1
332,562 - SO0329 0.38 -2.1
332,568 + SO0329 0.41 +0.2
332,618 - SO0329 0.63 -1.0
332,634 - SO0329 0.70 -2.5
332,665 + SO0329 0.84 +1.0
332,673 - SO0329 0.88 +1.7
332,677 + +1.0
332,702 - -0.8
332,734 - -2.0
332,916 - SO0330 0.13 -1.8
332,916 - SO0330 0.13 -1.0
332,918 + SO0330 0.14 -1.7
332,918 + SO0330 0.14 -1.3
332,918 + SO0330 0.14 -0.6
332,918 + SO0330 0.14 +0.2
332,918 + SO0330 0.14 -0.3
332,926 - SO0330 0.14 -2.0
332,926 - SO0330 0.14 -1.6
332,926 - SO0330 0.14 -0.6
332,926 - SO0330 0.14 -0.3
332,926 - SO0330 0.14 -1.2
332,926 - SO0330 0.14 +0.2
332,926 - SO0330 0.14 -2.0
332,950 - SO0330 0.16 -2.6
332,982 - SO0330 0.18 -1.8
332,999 + SO0330 0.19 -0.9
332,999 + SO0330 0.19 -0.0
333,007 - SO0330 0.20 -0.8
333,031 - SO0330 0.21 -1.6
333,090 - SO0330 0.25 -2.0
333,122 + SO0330 0.28 -0.6
333,142 + SO0330 0.29 -1.1
333,150 - SO0330 0.29 -1.7
333,163 + SO0330 0.30 -2.1
333,163 + SO0330 0.30 -0.1
333,229 + SO0330 0.35 -0.9
333,237 - SO0330 0.35 -2.4
333,331 - SO0330 0.42 -2.3
333,438 + SO0330 0.49 -0.1
333,444 - SO0330 0.50 -1.8
333,508 - SO0330 0.54 -0.2
333,611 + SO0330 0.61 -1.1
333,614 + SO0330 0.61 -0.1
333,639 - SO0330 0.63 -2.1
333,651 + SO0330 0.64 -1.2
333,673 + SO0330 0.65 -0.6
333,673 + SO0330 0.65 -2.5
333,673 + SO0330 0.65 -0.6
333,673 + SO0330 0.65 -0.8
333,681 - SO0330 0.66 -0.1
333,681 - SO0330 0.66 -1.9
333,681 - SO0330 0.66 -1.6
333,683 + SO0330 0.66 +0.8
333,686 - SO0330 0.66 -1.8
333,716 - SO0330 0.68 -2.0
333,718 - SO0330 0.69 -0.8
333,768 - SO0330 0.72 -1.5
333,768 - SO0330 0.72 -1.1
333,934 + SO0330 0.83 -0.8
333,934 + SO0330 0.83 -1.4
333,988 - SO0330 0.87 -0.9
334,096 - -3.7
334,227 + SO0331 0.17 -0.9
334,227 + SO0331 0.17 -0.9
334,227 + SO0331 0.17 -0.4
334,228 - SO0331 0.17 -1.8
334,235 - SO0331 0.20 -1.4
334,428 - SO0331 0.83 +0.8
334,462 + +0.1
334,470 - +2.6
334,542 - -0.0
334,542 - +1.5
334,542 - -1.5
334,550 - -0.1
334,606 - +0.4
334,641 - SO0332 0.12 +0.3
334,641 - SO0332 0.12 +0.4
334,657 + SO0332 0.13 +1.2
334,713 + SO0332 0.18 -0.2
334,713 + SO0332 0.18 -0.8
334,834 - SO0332 0.30 +1.4
334,836 + SO0332 0.30 -1.8
334,836 + SO0332 0.30 -3.6
334,836 + SO0332 0.30 -2.2
334,836 + SO0332 0.30 -0.3
334,836 + SO0332 0.30 -0.1
334,836 + SO0332 0.30 -0.4
334,842 + SO0332 0.31 +0.6
334,843 + SO0332 0.31 -2.4
334,844 - SO0332 0.31 -1.5
334,844 - SO0332 0.31 -0.9
334,851 - SO0332 0.32 +0.1
334,851 - SO0332 0.32 -2.7
334,929 - SO0332 0.39 -2.3
334,967 + SO0332 0.43 -1.3
335,004 - SO0332 0.47 -0.1
335,044 + SO0332 0.50 -0.8
335,044 + SO0332 0.50 -1.7
335,062 - SO0332 0.52 -1.8
335,062 - SO0332 0.52 -0.6
335,109 + SO0332 0.57 -0.6
335,120 + SO0332 0.58 +0.5
335,128 - SO0332 0.58 +0.0
335,128 - SO0332 0.58 -2.1
335,128 - SO0332 0.58 +1.1
335,128 - SO0332 0.58 -0.7
335,146 + SO0332 0.60 -1.6

Or see this region's nucleotide sequence