Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4128

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4128 and Dshi_4129 are separated by 139 nucleotides Dshi_4128: Dshi_4128 - hypothetical protein (RefSeq), at 60,093 to 60,374 _4128 Dshi_4129: Dshi_4129 - polysaccharide biosynthesis protein (RefSeq), at 60,514 to 61,947 _4129 Position (kb) 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1at 59.164 kb on - strandat 59.198 kb on - strandat 59.220 kb on + strandat 59.254 kb on - strandat 59.275 kb on - strandat 59.356 kb on - strandat 59.395 kb on - strandat 59.479 kb on - strandat 59.564 kb on + strandat 59.565 kb on + strandat 59.617 kb on + strandat 59.635 kb on - strandat 59.665 kb on + strandat 59.727 kb on + strandat 59.727 kb on + strandat 59.774 kb on + strandat 59.858 kb on - strandat 59.885 kb on - strandat 59.949 kb on - strandat 60.024 kb on - strandat 60.151 kb on + strand, within Dshi_4128at 60.191 kb on - strand, within Dshi_4128at 60.191 kb on - strand, within Dshi_4128at 60.201 kb on + strand, within Dshi_4128at 60.209 kb on - strand, within Dshi_4128at 60.258 kb on + strand, within Dshi_4128at 60.345 kb on + strand, within Dshi_4128at 60.407 kb on - strandat 60.415 kb on - strandat 60.425 kb on - strandat 60.490 kb on + strandat 60.498 kb on - strandat 60.561 kb on + strandat 60.565 kb on - strandat 60.568 kb on + strandat 60.569 kb on - strandat 60.700 kb on + strand, within Dshi_4129at 60.735 kb on + strand, within Dshi_4129at 60.743 kb on - strand, within Dshi_4129at 60.790 kb on - strand, within Dshi_4129at 60.809 kb on - strand, within Dshi_4129at 60.847 kb on - strand, within Dshi_4129at 60.930 kb on - strand, within Dshi_4129at 60.942 kb on + strand, within Dshi_4129at 60.977 kb on + strand, within Dshi_4129at 61.026 kb on - strand, within Dshi_4129at 61.098 kb on - strand, within Dshi_4129at 61.149 kb on + strand, within Dshi_4129at 61.196 kb on + strand, within Dshi_4129at 61.210 kb on - strand, within Dshi_4129at 61.222 kb on - strand, within Dshi_4129at 61.291 kb on - strand, within Dshi_4129at 61.301 kb on - strand, within Dshi_4129at 61.305 kb on - strand, within Dshi_4129at 61.306 kb on - strand, within Dshi_4129at 61.318 kb on - strand, within Dshi_4129at 61.344 kb on - strand, within Dshi_4129

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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59,164 - -0.7
59,198 - -0.4
59,220 + -0.2
59,254 - +0.7
59,275 - -1.4
59,356 - +0.8
59,395 - -1.1
59,479 - -0.6
59,564 + -0.2
59,565 + -0.5
59,617 + -2.5
59,635 - -0.2
59,665 + -1.5
59,727 + -1.0
59,727 + -1.3
59,774 + -3.1
59,858 - -0.1
59,885 - -0.1
59,949 - +0.3
60,024 - -0.1
60,151 + Dshi_4128 0.21 -1.7
60,191 - Dshi_4128 0.35 -0.0
60,191 - Dshi_4128 0.35 +0.0
60,201 + Dshi_4128 0.38 -0.3
60,209 - Dshi_4128 0.41 -0.2
60,258 + Dshi_4128 0.59 -1.2
60,345 + Dshi_4128 0.89 +0.1
60,407 - -0.7
60,415 - +1.6
60,425 - -0.2
60,490 + -0.8
60,498 - +0.4
60,561 + -0.2
60,565 - -2.5
60,568 + +0.2
60,569 - -0.4
60,700 + Dshi_4129 0.13 -1.5
60,735 + Dshi_4129 0.15 +0.4
60,743 - Dshi_4129 0.16 -1.0
60,790 - Dshi_4129 0.19 -0.0
60,809 - Dshi_4129 0.21 -0.3
60,847 - Dshi_4129 0.23 +1.5
60,930 - Dshi_4129 0.29 +0.4
60,942 + Dshi_4129 0.30 -0.5
60,977 + Dshi_4129 0.32 -0.1
61,026 - Dshi_4129 0.36 -0.2
61,098 - Dshi_4129 0.41 -0.8
61,149 + Dshi_4129 0.44 +1.0
61,196 + Dshi_4129 0.48 +0.1
61,210 - Dshi_4129 0.49 -0.3
61,222 - Dshi_4129 0.49 -0.3
61,291 - Dshi_4129 0.54 +0.3
61,301 - Dshi_4129 0.55 -1.1
61,305 - Dshi_4129 0.55 +0.8
61,306 - Dshi_4129 0.55 +0.8
61,318 - Dshi_4129 0.56 -0.0
61,344 - Dshi_4129 0.58 -0.4

Or see this region's nucleotide sequence