Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3832 and Dshi_3833 are separated by 98 nucleotides Dshi_3833 and Dshi_3834 overlap by 11 nucleotides
Dshi_3832: Dshi_3832 - glucosylglycerol-phosphate synthase (RefSeq), at 40,174 to 41,664
_3832
Dshi_3833: Dshi_3833 - phospholipase D/Transphosphatidylase (RefSeq), at 41,763 to 43,181
_3833
Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907
_3834
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.855 kb on + strand, within Dshi_3832 at 40.954 kb on - strand, within Dshi_3832 at 41.005 kb on + strand, within Dshi_3832 at 41.005 kb on + strand, within Dshi_3832 at 41.013 kb on - strand, within Dshi_3832 at 41.187 kb on + strand, within Dshi_3832 at 41.209 kb on - strand, within Dshi_3832 at 41.323 kb on + strand, within Dshi_3832 at 41.425 kb on + strand, within Dshi_3832 at 41.550 kb on + strand at 41.586 kb on + strand at 41.587 kb on - strand at 41.606 kb on + strand at 41.708 kb on + strand at 41.727 kb on + strand at 41.727 kb on + strand at 41.842 kb on - strand at 41.985 kb on - strand, within Dshi_3833 at 42.084 kb on + strand, within Dshi_3833 at 42.110 kb on - strand, within Dshi_3833 at 42.110 kb on - strand, within Dshi_3833 at 42.330 kb on + strand, within Dshi_3833 at 42.429 kb on - strand, within Dshi_3833 at 42.456 kb on + strand, within Dshi_3833 at 42.542 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.683 kb on + strand, within Dshi_3833 at 42.684 kb on + strand, within Dshi_3833 at 42.764 kb on - strand, within Dshi_3833 at 42.786 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 43.012 kb on - strand, within Dshi_3833 at 43.047 kb on - strand at 43.049 kb on + strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.226 kb on - strand at 43.380 kb on - strand, within Dshi_3834 at 43.400 kb on - strand, within Dshi_3834 at 43.477 kb on - strand, within Dshi_3834 at 43.496 kb on + strand, within Dshi_3834 at 43.499 kb on - strand, within Dshi_3834 at 43.504 kb on - strand, within Dshi_3834 at 43.667 kb on - strand, within Dshi_3834 at 43.715 kb on + strand, within Dshi_3834 at 43.765 kb on - strand, within Dshi_3834 at 43.779 kb on - strand, within Dshi_3834 at 43.817 kb on - strand, within Dshi_3834 at 43.851 kb on - strand, within Dshi_3834 at 44.003 kb on - strand, within Dshi_3834 at 44.024 kb on - strand, within Dshi_3834 at 44.128 kb on - strand, within Dshi_3834 at 44.138 kb on + strand, within Dshi_3834
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 40,855 + Dshi_3832 0.46 -0.4 40,954 - Dshi_3832 0.52 +0.5 41,005 + Dshi_3832 0.56 -0.5 41,005 + Dshi_3832 0.56 +0.4 41,013 - Dshi_3832 0.56 -0.2 41,187 + Dshi_3832 0.68 +1.1 41,209 - Dshi_3832 0.69 -0.1 41,323 + Dshi_3832 0.77 -0.4 41,425 + Dshi_3832 0.84 +0.5 41,550 + +0.9 41,586 + -2.5 41,587 - -0.4 41,606 + +0.0 41,708 + +0.4 41,727 + -0.7 41,727 + -1.8 41,842 - -0.3 41,985 - Dshi_3833 0.16 -0.4 42,084 + Dshi_3833 0.23 -0.2 42,110 - Dshi_3833 0.24 +0.8 42,110 - Dshi_3833 0.24 +0.2 42,330 + Dshi_3833 0.40 -0.1 42,429 - Dshi_3833 0.47 -0.4 42,456 + Dshi_3833 0.49 -0.4 42,542 + Dshi_3833 0.55 +0.8 42,593 + Dshi_3833 0.58 +0.9 42,593 + Dshi_3833 0.58 -0.2 42,683 + Dshi_3833 0.65 -1.0 42,684 + Dshi_3833 0.65 +0.4 42,764 - Dshi_3833 0.71 +1.2 42,786 - Dshi_3833 0.72 -0.6 42,856 - Dshi_3833 0.77 +0.5 42,856 - Dshi_3833 0.77 +0.6 43,012 - Dshi_3833 0.88 +0.6 43,047 - +0.4 43,049 + -2.7 43,218 + -0.5 43,218 + -0.8 43,226 - -1.2 43,380 - Dshi_3834 0.12 +0.2 43,400 - Dshi_3834 0.13 +1.3 43,477 - Dshi_3834 0.18 +2.2 43,496 + Dshi_3834 0.19 +0.1 43,499 - Dshi_3834 0.19 -0.6 43,504 - Dshi_3834 0.19 +1.5 43,667 - Dshi_3834 0.29 +2.0 43,715 + Dshi_3834 0.31 -0.8 43,765 - Dshi_3834 0.34 -0.4 43,779 - Dshi_3834 0.35 -1.5 43,817 - Dshi_3834 0.37 +0.5 43,851 - Dshi_3834 0.39 +0.8 44,003 - Dshi_3834 0.48 -2.4 44,024 - Dshi_3834 0.49 +1.1 44,128 - Dshi_3834 0.55 -1.2 44,138 + Dshi_3834 0.56 -1.2
Or see this region's nucleotide sequence